Injectivity failure in crystalline comparisons

For smooth affine varieties in positive characteristic, we identify a slope obstruction to the injectivity of the comparison morphism from rigid cohomology to rationalised crystalline cohomology. This yields a negative answer to a question of Esnault--Kisin--Petrov concerning the injectivity of the de Rham-to-crystalline comparison map for smooth affine schemes over the Witt vectors that admit good compactifications. In contrast, we establish injectivity for certain subspaces defined by slope conditions as well as in cohomological degree one. For the latter case, we also prove the result with coefficients in $F$-able overholonomic $D$-modules leveraging a generalisation of Kedlaya's full faithfulness theorem. Beyond injectivity, we obtain various separation results for the affinoid topology on rigid and convergent cohomology. These results allow us to determine integral algebraic de Rham cohomology modulo torsion and to provide a more conceptual explanation for Ertl and Shiho's construction of varieties for which integral Monsky--Washnitzer cohomology modulo torsion is not finitely generated. Along the way, we prove a new integral comparison theorem between Monsky--Washnitzer cohomology and algebraic de Rham cohomology and we define fractional $p$-adic Tate twists, computing non-integral slopes of crystalline cohomology.