Improved space-time tradeoffs for approximate full-text indexing with one edit error
Abstract
In this paper we are interested in indexing texts for substring matching queries with one edit error. That is, given a text of characters over an alphabet of size , we are asked to build a data structure that answers the following query: find all the substrings of the text that are at edit distance at most from a given string of length . In this paper we show two new results for this problem. The first result, suitable for an unbounded alphabet, uses (where is any constant such that ) words of space and answers to queries in time . This improves simultaneously in space and time over the result of Cole et al. The second result, suitable only for a constant alphabet, relies on compressed text indices and comes in two variants: the first variant uses bits of space and answers to queries in time , while the second variant uses bits of space and answers to queries in time . This second result improves on the previously best results for constant alphabets achieved in Lam et al. (Algorithmica 2008) and Chan et al. (Algorithmica 2010).
Cite
@article{arxiv.1103.2167,
title = {Improved space-time tradeoffs for approximate full-text indexing with one edit error},
author = {Djamal Belazzougui},
journal= {arXiv preprint arXiv:1103.2167},
year = {2014}
}
Comments
Accepted for publication in a journal (28 pages)