English

Hardness and algorithmic results for the approximate cover problem

Data Structures and Algorithms 2018-06-22 v1

Abstract

In CPM 2017, Amir et al. introduce a problem, named \emph{approximate string cover} (\textbf{ACP}), motivated by many aplications including coding and automata theory, formal language theory, combinatorics and molecular biology. A \emph{cover} of a string TT is a string CC for which every letter of TT lies within some occurrence of CC. The input of the \textbf{ACP} problem consists of a string TT and an integer mm (less than the length of TT), and the goal is to find a string CC of length mm that covers a string TT' which is as close to TT as possible (under some predefined distance). Amir et al. study the problem for the Hamming distance. In this paper we continue the work of Amir et al. and show the following results: We show an approximation algorithm for the \textbf{ACP} with an approximation ratio of OPT\sqrt{OPT}, where OPT is the size of the optimal solution. We provide an FPT algorithm with respect to the alphabet size. \item The \textbf{ACP} problem naturally extends to pseudometrics. Moreover, we show that for some family of pseudometrics, that we term \emph{homogenous additive pseudometrics}, the complexity of \textbf{ACP} remains unchanged. We partially give an answer to an open problem of Amir et al. and show that the Hamming distance over an unbounded alphabet is equivalent to an extended metric over a fixed sized alphabet.

Keywords

Cite

@article{arxiv.1806.08135,
  title  = {Hardness and algorithmic results for the approximate cover problem},
  author = {Alexandru Popa and Andrei Tanasescu},
  journal= {arXiv preprint arXiv:1806.08135},
  year   = {2018}
}
R2 v1 2026-06-23T02:37:04.092Z