Error Tree: A Tree Structure for Hamming & Edit Distances & Wildcards Matching
Data Structures and Algorithms
2020-08-25 v1
Abstract
Error Tree is a novel tree structure that is mainly oriented to solve the approximate pattern matching problems, Hamming and edit distances, as well as the wildcards matching problem. The input is a text of length over a fixed alphabet of length , a pattern of length , and . The output is to find all positions that have Hamming distance, edit distance, or wildcards matching with . The algorithm proposes for Hamming distance and wildcards matching a tree structure that needs words and takes )() in the average case) of query time for any online/offline pattern, where is the number of outputs. As well, a tree structure of words and )() in the average case) query time for edit distance for any online/offline pattern.
Cite
@article{arxiv.1506.04486,
title = {Error Tree: A Tree Structure for Hamming & Edit Distances & Wildcards Matching},
author = {Anas Al-Okaily},
journal= {arXiv preprint arXiv:1506.04486},
year = {2020}
}