Edit Distance: Sketching, Streaming and Document Exchange
Abstract
We show that in the document exchange problem, where Alice holds and Bob holds , Alice can send Bob a message of size bits such that Bob can recover using the message and his input if the edit distance between and is no more than , and output "error" otherwise. Both the encoding and decoding can be done in time . This result significantly improves the previous communication bounds under polynomial encoding/decoding time. We also show that in the referee model, where Alice and Bob hold and respectively, they can compute sketches of and of sizes bits (the encoding), and send to the referee, who can then compute the edit distance between and together with all the edit operations if the edit distance is no more than , and output "error" otherwise (the decoding). To the best of our knowledge, this is the first result for sketching edit distance using bits. Moreover, the encoding phase of our sketching algorithm can be performed by scanning the input string in one pass. Thus our sketching algorithm also implies the first streaming algorithm for computing edit distance and all the edits exactly using bits of space.
Cite
@article{arxiv.1607.04200,
title = {Edit Distance: Sketching, Streaming and Document Exchange},
author = {Djamal Belazzougui and Qin Zhang},
journal= {arXiv preprint arXiv:1607.04200},
year = {2016}
}
Comments
Full version of an article to be presented at the 57th Annual IEEE Symposium on Foundations of Computer Science (FOCS 2016)