English

Best practices for nonadiabatic molecular dynamics simulations

Chemical Physics 2026-01-21 v2

Abstract

Nonadiabatic molecular dynamics simulations aim to describe the coupled electron-nuclear dynamics of molecules in excited electronic states. These simulations have been applied to understand a plethora of photochemical and photophysical processes, and, as a result, the number of nonadiabatic dynamics simulations has been growing significantly over the past decade. Yet, the field remains in its infancy, and a potential user may find it difficult to approach this type of simulation, given their complexity and the number of elements that should be considered for a (hopefully) successful nonadiabatic dynamics simulation. Nonadiabatic molecular dynamics relies on several key steps: finding a level of electronic-structure theory to describe the molecule in its Franck-Condon region and beyond, describing the photoexcitation process, selecting a method to perform the nonadiabatic dynamics, and analyzing the final results before calculating observables for a more direct comparison with experiment. This Best Practices guide aims to provide a general guide for the user of nonadiabatic molecular dynamics by (i) discussing the fundamentals of nonadiabatic molecular dynamics and the various trajectory-based methods developed for molecular systems, (ii) introducing the different electronic-structure methods and concepts - adiabatic/diabatic representation, conical intersections - that can be used with nonadiabatic molecular dynamics (or for benchmarking), (iii) providing details on the various steps required to perform a nonadiabatic dynamics simulation and their practical use, as well as guided examples and a discussion on the calculation of observables, (iv) proposing a FAQ with the typical questions a user may have when performing nonadiabatic dynamics, and (v) sketching a checklist for the key practical steps when performing a (trajectory-based) nonadiabatic molecular dynamics.

Keywords

Cite

@article{arxiv.2508.05263,
  title  = {Best practices for nonadiabatic molecular dynamics simulations},
  author = {Antonio Prlj and Jack T. Taylor and Jiří Janoš and Elise Lognon and Daniel Hollas and Petr Slavíček and Federica Agostini and Basile F. E. Curchod},
  journal= {arXiv preprint arXiv:2508.05263},
  year   = {2026}
}

Comments

Revised article. This is a living article. The Community is highly encouraged to submit suggestions for updates as a new issue on the GitHub repository of this article: https://github.com/ispg-group/best-practices-namd/issues/new

R2 v1 2026-07-01T04:38:51.591Z