English

Approximation of Intractable Likelihood Functions in Systems Biology via Normalizing Flows

Quantitative Methods 2023-12-06 v1

Abstract

Systems biology relies on mathematical models that often involve complex and intractable likelihood functions, posing challenges for efficient inference and model selection. Generative models, such as normalizing flows, have shown remarkable ability in approximating complex distributions in various domains. However, their application in systems biology for approximating intractable likelihood functions remains unexplored. Here, we elucidate a framework for leveraging normalizing flows to approximate complex likelihood functions inherent to systems biology models. By using normalizing flows in the Simulation-based inference setting, we demonstrate a method that not only approximates a likelihood function but also allows for model inference in the model selection setting. We showcase the effectiveness of this approach on real-world systems biology problems, providing practical guidance for implementation and highlighting its advantages over traditional computational methods.

Keywords

Cite

@article{arxiv.2312.02391,
  title  = {Approximation of Intractable Likelihood Functions in Systems Biology via Normalizing Flows},
  author = {Vincent D. Zaballa and Elliot E. Hui},
  journal= {arXiv preprint arXiv:2312.02391},
  year   = {2023}
}

Comments

NeurIPs 2023 Generative AI and Biology workshop paper

R2 v1 2026-06-28T13:41:07.098Z