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A principled framework for uncertainty decomposition in TabPFN

Machine Learning 2026-02-05 v1 Machine Learning Methodology

Abstract

TabPFN is a transformer that achieves state-of-the-art performance on supervised tabular tasks by amortizing Bayesian prediction into a single forward pass. However, there is currently no method for uncertainty decomposition in TabPFN. Because it behaves, in an idealised limit, as a Bayesian in-context learner, we cast the decomposition challenge as a Bayesian predictive inference (BPI) problem. The main computational tool in BPI, predictive Monte Carlo, is challenging to apply here as it requires simulating unmodeled covariates. We therefore pursue the asymptotic alternative, filling a gap in the theory for supervised settings by proving a predictive CLT under quasi-martingale conditions. We derive variance estimators determined by the volatility of predictive updates along the context. The resulting credible bands are fast to compute, target epistemic uncertainty, and achieve near-nominal frequentist coverage. For classification, we further obtain an entropy-based uncertainty decomposition.

Keywords

Cite

@article{arxiv.2602.04596,
  title  = {A principled framework for uncertainty decomposition in TabPFN},
  author = {Sandra Fortini and Kenyon Ng and Sonia Petrone and Judith Rousseau and Susan Wei},
  journal= {arXiv preprint arXiv:2602.04596},
  year   = {2026}
}

Comments

9 pages (+2 reference, +34 appendix). Code in https://github.com/weiyaw/ud4pfn

R2 v1 2026-07-01T09:35:59.201Z