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The present work presents some results about the categorial relation between logics and its categories of structures. A (propositional, finitary) logic is a pair given by a signature and Tarskian consequence relation on its formula algebra.…

Category Theory · Mathematics 2016-03-04 Darllan Conceição Pinto , Hugo Luiz Mariano

This paper deals with the foundations of quantum mechanics. We start by outlining the characterisation, due to Birkhoff and Von Neumann, of the logical structures of the theories of classical physics and quantum mechanics, as boolean and…

Quantum Physics · Physics 2007-05-23 John Foy

Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…

Other Quantitative Biology · Quantitative Biology 2024-11-25 Eran Agmon

This work examines the interconnections between logic, epistemology, and sciences within the Naturalist tradition. It presents a scheme that connects logic, mathematics, physics, chemistry, biology, and cognition, emphasizing…

Other Computer Science · Computer Science 2023-09-26 Gordana Dodig-Crnkovic

We give new lower bounds for the (higher) topological complexity of a space, in terms of the Lusternik-Schnirelmann category of a certain auxiliary space. We also give new lower bounds for the rational topological complexity of a space, and…

Algebraic Topology · Mathematics 2016-01-20 Mark Grant , Gregory Lupton , John Oprea

This note gives an introduction to Lagrangian field theories in the presence of boundaries. After an overview of the classical aspects, the cohomological formalisms to resolve singularities in the bulk and in the boundary theories (the BV…

Mathematical Physics · Physics 2023-05-24 Alberto S. Cattaneo , Pavel Mnev , Nicolai Reshetikhin

We investigate mathematical structures that provide natural semantics for families of (quantified) non-classical logics featuring special unary connectives, known as recovery operators, that allow us to 'recover' the properties of classical…

Logic in Computer Science · Computer Science 2023-07-25 David Fuenmayor

We construct a second-quantized representation with a structure of balanced ternary formalism, which involves three substances in organic molecular materials, namely electron, hole and charge-transfer exciton, into a uniform framework. The…

Quantum Physics · Physics 2025-10-10 Yao Yao

Reasoning with quantifier expressions in natural language combines logical and arithmetical features, transcending strict divides between qualitative and quantitative. Our topic is this cooperation of styles as it occurs in common…

Logic · Mathematics 2025-07-08 Johan van Benthem , Thomas Icard

We define and study logics in the framework of probabilistic team semantics and over metafinite structures. Our work is paralleled by the recent development of novel axiomatizable and tractable logics in team semantics that are closed under…

Logic in Computer Science · Computer Science 2021-04-12 Miika Hannula , Minna Hirvonen , Juha Kontinen

Identity, response to external stimuli, and spatial architecture of a living system are central topics of molecular biology. Presently, they are largely seen as a result of the interplay between a gene repertoire and the regulatory…

Molecular Networks · Quantitative Biology 2007-05-23 M. Cosentino Lagomarsino , P. Jona , B. Bassetti

The mathematical formalisms used to model biological systems induce both latent and ambiguous assumptions that can limit or distort their representational capabilities. Developing formalisms that can represent systems more precisely is…

Quantitative Methods · Quantitative Biology 2026-05-25 Léo Diaz , Sean T. Vittadello , Michael P. H. Stumpf

We present a unified theory for formal mathematical systems including recursive systems closely related to formal grammars, including the predicate calculus as well as a formal induction principle. We introduce recursive systems generating…

Logic · Mathematics 2021-12-21 Matthias Kunik

This short text summarizes the work in biology proposed in our book, Perspectives on Organisms, where we analyse the unity proper to organisms by looking at it from different viewpoints. We discuss the theoretical roles of biological time,…

Other Computer Science · Computer Science 2019-03-14 Giuseppe Longo , Maël Montévil

We describe the problem of Sweedler's duals for bialgebras as essentially characterizing the domain of the transpose of the multiplication. This domain is the set of what could be called ``representative linear forms'' which are the…

Combinatorics · Mathematics 2009-08-17 Gérard H. E. Duchamp , Christophe Tollu

We give a self-contained exposition of some mathematical aspects of the Mueller-Stokes formalism. In the first part we review some basic notions of linear algebra and establish a proper notation. In the second part we introduce the…

Mathematical Physics · Physics 2007-05-23 A. Aiello , J. P. Woerdman

We present a heuristic derivation of Born's rule and unitary transforms in Quantum Mechanics, from a simple set of axioms built upon a physical phenomenology of quantization. This approach naturally leads to the usual quantum formalism,…

Quantum Physics · Physics 2022-01-04 Alexia Auffeves , Philippe Grangier

Modal logic is a paradigm for several useful and applicable formal systems in computer science. It generally retains the low complexity of classical propositional logic, but notable exceptions exist in the domains of description, temporal,…

Logic in Computer Science · Computer Science 2016-09-15 Davide Bresolin , Emilio Muñoz-Velasco , Guido Sciavicco

A notion of biologic system or just a system implies a functional wholeness of comprising system components. Positive and negative feedback are the examples of how the idea to unite anatomical elements in the whole functional structure was…

Other Quantitative Biology · Quantitative Biology 2014-06-03 Garri Davydyan

This paper illustrates the richness of the concept of regular sets of time bounds and demonstrates its application to problems of computational complexity. There is a universe of bounds whose regular subsets allow to represent several time…

Computational Complexity · Computer Science 2013-09-24 Armin Hemmerling