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The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

Populations and Evolution · Quantitative Biology 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

Can unicellular organisms survive a drastic temperature change, and adapt to it after many generations? In simulations of the Penna model of biological ageing, both extinction and adaptation were found for asexual and sexual reproduction as…

Populations and Evolution · Quantitative Biology 2007-05-23 D. Stauffer , H. Arndt

The sexual version of the Penna model of biological ageing, simulated since 1996, is compared here with alternative forms of reproduction as well as with models not involving ageing. In particular we want to check how sexual forms of life…

Statistical Mechanics · Physics 2007-05-23 D. Stauffer , P. M. C. de Oliveira , S. Moss de Oliveira , T. J. P. Penna , J. S. Sa' Martins

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

Genomics · Quantitative Biology 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

Populations and Evolution · Quantitative Biology 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

We have simulated demographic changes in the human population using the Penna microscopic model, based on the simple Monte Carlo method. The results of simulations have shown that during a few generations changes in the genetic pool of a…

Statistical Mechanics · Physics 2007-05-23 A. Laszkiewicz , Sz. Szymczak , S. Cebrat

In this paper the Penna model is reconsidered. With computer simulations we check how the control parameters of the model influence the size of the stable population.

Populations and Evolution · Quantitative Biology 2007-05-23 K. Malarz , M. Sitarz , P. Gronek , A. Dydejczyk

The bit-string Penna Model is used to simulate the competition between an asexual parthenogenetic and a sexual population sharing the same environment. A new-born of either population can mutate and become a part of the other with some…

Statistical Mechanics · Physics 2009-10-31 J. S. Sa' Martins

We are interested in modeling some two-level population dynamics, resulting from the interplay of ecological interactions and phenotypic variation of individuals (or hosts) and the evolution of cells (or parasites) of two types living in…

Probability · Mathematics 2011-01-21 Sylvie Méléard , Sylvie Roelly

We represent a process of learning by using bit strings, where 1-bits represent the knowledge acquired by individuals. Two ways of learning are considered: individual learning by trial-and-error; and social learning by copying knowledge…

Populations and Evolution · Quantitative Biology 2007-05-23 Armando Ticona Bustillos , Paulo Murilo C. de Oliveira

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

Populations and Evolution · Quantitative Biology 2007-05-23 Miroslaw R. Dudek

Spatial patterning can be crucially important for understanding the behavior of interacting populations. Here we investigate a simple model of parasite and host populations in which parasites are random walkers that must come into contact…

Populations and Evolution · Quantitative Biology 2015-09-07 J. J. Dong , B. Skinner , N. Breecher , B. Schmittmann , R. K. P. Zia

We have modified the sexual Penna model by introducing the fluctuating environment and fluctuations representing physiological functions of individuals. Additionally, we have introduced the mother care corresponding to the protection…

Populations and Evolution · Quantitative Biology 2008-11-04 Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

Modifying the Redfield model of sexual reproduction and the Penna model of biological aging, we compare reproduction with and without recombination in age-structured populations. In contrast to Redfield and in agreement with Bernardes we…

The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of…

Populations and Evolution · Quantitative Biology 2015-05-19 D. Stauffer , S. Cebrat , T. J. P. Penna , A. O. Sousa

We introduce into the Penna Model for biological ageing one of the possible male mechanisms used to maximize the ability of their sperm to compete with sperm from other males. Such a selfish mechanism increases the male reproduction success…

Condensed Matter · Physics 2009-11-07 P. M. C de Oliveira , S. Moss de Oliveira

In this paper we consider a generalization to the asexual version of the Penna model for biological aging, where we take a continuous time limit. The genotype associated to each individual is an interval of real numbers over which Dirac…

Condensed Matter · Physics 2009-10-31 R. M. C. de Almeida , G. L. Thomas

We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

Statistical Mechanics · Physics 2015-06-24 J. S. Sá Martins , D. Stauffer

A bit-string model for the evolution of a population of haploid organisms, subject to competition, reproduction with mutation and selection is studied, using mean field theory and Monte Carlo simulations. We show that, depending on…

Statistical Mechanics · Physics 2009-11-07 Kathia M. Fehsenfeld , Ronald Dickman , Americo T. Bernardes

The understanding of language competition helps us to predict extinction and survival of languages spoken by minorities. A simple agent-based model of a sexual population, based on the Penna model, is built in order to find out under which…

Physics and Society · Physics 2009-11-11 Veit Schwammle
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