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Single molecule data made of on and off events are ubiquitous. Famous examples include enzyme turnover, probed via fluorescence, and opening and closing of ion-channel, probed via the flux of ions. The data reflects the dynamics in the…

Quantitative Methods · Quantitative Biology 2010-08-16 Ophir Flomenbom , Robert J. Silbey

Deducing an underlying multi-substate on-off kinetic scheme (KS) from the statistical properties of a two-state trajectory is the aim from many experiments in biophysics and chemistry, such as, ion channel recordings, enzymatic activity and…

Quantitative Methods · Quantitative Biology 2011-04-11 Ophir Flomenbom

A time trajectory of an observable that fluctuates between two values (say, on and off), stemming from some unknown multi-substate kinetic scheme, is the output of many single molecule experiments. Here we show that when all successive…

Subcellular Processes · Quantitative Biology 2010-08-16 Ophir Flomenbom , Joseph Klafter , Attila Szabo

Trajectories of a signal that fluctuates between two states which originate from single molecule activities have become ubiquitous. Common examples are trajectories of ionic flux through individual membrane-channels, and of photon counts…

Quantitative Methods · Quantitative Biology 2007-05-23 Ophir Flomenbom , J. Klafter

Application of the information-theoretic Maximum Caliber principle to the microtrajectories of a two-state system shows that the determination of key dynamical quantities can be mapped onto the evaluation of properties of the 1-D Ising…

Biological Physics · Physics 2010-08-17 Sarah Marzen , Dave Wu , Mandar Inamdar , Rob Phillips

A new method of quantum state tomography for quantum information processing is described. The method based on two-dimensional Fourier transform technique involves detection of all the off-diagonal elements of the density matrix in a…

Quantum Physics · Physics 2009-11-07 Ranabir Das , T. S. Mahesh , Anil Kumar

The communication of directions using quantum states is a useful laboratory test for some basic facts of quantum information. For a system of spin-1/2 particles there are different quantum states that can encode directions. This information…

Quantum Physics · Physics 2007-05-23 E. Bagan , M. Baig , R. Munoz-Tapia

Digital quantum computers offer a promising route for studying complex many-body systems that are otherwise inaccessible by their classical counterparts. Capabilities including mid-circuit measurements and feedback allow for simulating the…

We investigate the trajectory-level dynamics of a double quantum dot system using the newly developed formalism of stochastic excursions. This approach extends full counting statistics by enabling a filtering of complex trajectories into…

We study the trajectories of a single colloidal particle as it hops between two energy wells A and B, which are sculpted using adjacent optical traps by controlling their respective power levels and separation. Whereas the dynamical…

Data Analysis, Statistics and Probability · Physics 2008-03-05 David Wu , Kingshuk Ghosh , Mandar Inamdar , Heun Jin Lee , Scott Fraser , Ken Dill , Rob Phillips

A central feature of quantum mechanics is that a measurement is intrinsically probabilistic. As a result, continuously monitoring a quantum system will randomly perturb its natural unitary evolution. The ability to control a quantum system…

Quantum Physics · Physics 2014-09-04 S. J. Weber , A. Chantasri , J. Dressel , A. N. Jordan , K. W. Murch , I. Siddiqi

A continuously measured quantum system with multiple jump channels gives rise to a stochastic process described by random jump times and random emitted symbols, representing each jump channel. While much is known about the waiting time…

Quantum Physics · Physics 2023-06-21 Gabriel T. Landi

Particle transport in complex environments such as the interior of living cells is often (transiently) non-Fickian or anomalous, that is, it deviates from the laws of Brownian motion. Such anomalies may be the result of small-scale…

Statistical Mechanics · Physics 2022-02-15 Cai Dieball , Diego Krapf , Matthias Weiss , Aljaž Godec

We introduce a quantum sensing protocol for detecting the parameters characterizing the phase space displacement by using a single trapped ion as a quantum probe. We show that thanks to the laser-induced coupling between the ion's internal…

Quantum Physics · Physics 2018-03-13 Peter A. Ivanov , Nikolay V. Vitanov

The dynamics of open quantum systems is often modelled using master equations, which describe the expected outcome of an experiment (i.e., the average over many realizations of the same dynamics). Quantum trajectories, instead, model the…

Quantum Physics · Physics 2022-04-11 V. Macrì , F. Minganti , A. F. Kockum , A. Ridolfo , S. Savasta , F. Nori

Trajectories of on-off events are the output of many single molecule experiments. Usually, one describes the underlying mechanism that generates the trajectory using a kinetic scheme, and by analyzing the trajectory aims at deducing this…

Subcellular Processes · Quantitative Biology 2010-08-16 Ophir Flomenbom , Joseph Klafter

Motivated by previous efforts in detecting topological orders from the ground state(s) wave function, we introduce a new quantum information tool, coined the information convex, to capture the bulk and boundary topological excitations of a…

Strongly Correlated Electrons · Physics 2019-01-16 Bowen Shi , Yuan-Ming Lu

Motivated by thermodynamic considerations, we analyse the variation of the quantum mutual information on a unitary orbit of a bipartite system's state, with and without global constraints such as energy conservation. We solve the full…

Quantum Physics · Physics 2012-06-01 Sania Jevtic , David Jennings , Terry Rudolph

There has been much interest in developing methods for transferring quantum information. We discuss a way to transfer quantum information between two trapped ions through a wire. The motion of a trapped ion induces oscillating charges in…

Quantum Physics · Physics 2015-05-13 N. Daniilidis , T. Lee , R. Clark , S. Narayanan , H. Häffner

We investigate energy transport in several two-level atom or spin-1/2 models by a direct coupling to heat baths of different temperatures. The analysis is carried out on the basis of a recently derived quantum master equation which…

Quantum Physics · Physics 2009-11-13 Mathias Michel , Ortwin Hess , Hannu Wichterich , Jochen Gemmer
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