Related papers: Genetic Code as a Harmonic System: three Supplemen…
Rotation symmetric bosonic codes are an attractive encoding for qubits into oscillator degrees of freedom, particularly in superconducting qubit experiments. While these codes can tolerate considerable loss and dephasing, they will need to…
The immensity of the string landscape and the difficulty of identifying solutions that match the observed features of particle physics have raised serious questions about the predictive power of string theory. Modern methods of optimisation…
In this paper, we construct an infinite family of three-weight binary codes from linear codes over the ring $R=\mathbb{F}_2+v\mathbb{F}_2+v^2\mathbb{F}_2$, where $v^3=1.$ These codes are defined as trace codes. They have the algebraic…
We present a general construction of asymmetric quantum codes based on additive codes under the trace Hermitian inner product. Various families of additive codes over $\F_{4}$ are used in the construction of many asymmetric quantum codes…
In this paper we study the structure and properties of additive right and left polycyclic codes induced by a binary vector $a$ in $\mathbb{F}_{2}^{n}.$ We find the generator polynomials and the cardinality of these codes. We also study…
We have presented the basic knowledge on the structure of molecules coding the genetic information, mechanisms of transfer of this information from DNA to proteins and phenomena connected with replication of DNA. In particular, we have…
A framework of monomial codes is considered, which includes linear codes generated by the evaluation of certain monomials. Polar and Reed-Muller codes are the two best-known representatives of such codes and can be considered as two extreme…
An additive code is an $\mathbb{F}_q$-linear subspace of $\mathbb{F}_{q^m}^n$ over $\mathbb{F}_{q^m}$, which is not a linear subspace over $\mathbb{F}_{q^m}$. Linear complementary pairs (LCP) of codes have important roles in cryptography,…
In this paper, some nonbinary quantum codes using classical codes over Gaussian integers are obtained. Also, some of our quantum codes are better than or comparable with those known before, (for instance [[8; 2; 5]]4+i).
To support comparative genomics, population genetics, and medical genetics, we propose that a reference genome should come with a scheme for mapping each base in any DNA string to a position in that reference genome. We refer to a…
We observe structure in the sequences of quotients and remainders of the Euclidean algorithm with two families of inputs. Analyzing the remainders, we obtain new algorithms for computing modular inverses and representating prime numbers by…
Living organisms are not just random collections of organic molecules. There is continuous information processing going on in the apparent bouncing around of molecules of life. Optimisation criteria in this information processing can be…
We study minimal harmonic maps $g: {\mathbb{C}} \to SO(3) \backslash SL(3,{\mathbb{R}})$, parameterized by polynomial cubic differentials $P$ in the plane. The asymptotic structure of such a $g$ is determined by a convex polygon $Y(P)$ in…
This paper proposes a new family of recursive systematic convolutional codes, defined in the non-binary domain over different Galois fields GF(q) and intended to be used as component codes for the design of non-binary turbo codes. A general…
We present a method for reliably determining the lowest energy structure of an atomic cluster in an arbitrary model potential. The method is based on a genetic algorithm, which operates on a population of candidate structures to produce new…
In a first contribution, we revisit two certificates of positivity on (possibly non-compact) basic semialgebraic sets due to Putinar and Vasilescu [Comptes Rendus de l'Acad\'emie des Sciences-Series I-Mathematics, 328(6) (1999) pp.…
The idea of the evolution of the genetic code from the CG to the CGUA alphabet has been developed further. The assumption of the originally triplet structure of the genetic code has been substantiated. The hypothesis of the emergence of…
In this paper we study the structure of specific linear codes called DNA codes. The first attempts on studying such codes have been proposed over four element rings which are naturally matched with DNA four letters. Later, double (pair) DNA…
The matrix form of the presentation of the genetic code is described as the cognitive form to analyze structures of the genetic code. A similar matrix form is utilized in the theory of signal processing. The Kronecker family of the genetic…
Motivated by applications in in-vivo DNA storage, we study codes for correcting duplications. A reverse-complement duplication of length $k$ is the insertion of the reversed and complemented copy of a substring of length $k$ adjacent to its…