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Related papers: Topological coding in hippocampus

200 papers

Functional brain connectivity changes dynamically over time, making its representation challenging for learning on non-Euclidean data. We present a framework that encodes dynamic functional connectivity as an image representation of…

Neurons and Cognition · Quantitative Biology 2025-11-14 Peilin He , Tananun Songdechakraiwut

In the brain, neural activity undergoes directed flows between states, thus breaking time-reversal symmetry. At the same time, animals also exhibit irreversible flows between behavioral states. Yet it remains unclear whether -- and how --…

Neurons and Cognition · Quantitative Biology 2026-01-12 Kaiyue Shi , Christopher W. Lynn

Geographic space is better understood through the topological relationship of the underlying streets (note: entire streets rather than street segments), which enables us to see scaling or fractal or living structure of far more…

Physics and Society · Physics 2020-09-04 Ding Ma , Itzhak Omer , Toshihiro Osaragi , Mats Sandberg , Bin Jiang

Vascular networks play a crucial role in understanding brain functionalities. Brain integrity and function, neuronal activity and plasticity, which are crucial for learning, are actively modulated by their local environments, specifically…

Neurons and Cognition · Quantitative Biology 2024-02-28 Jiachen Yao , Nina Hagemann , Qiaojie Xiong , Jianxu Chen , Dirk M. Hermann , Chao Chen

Humans are expert explorers. Understanding the computational cognitive mechanisms that support this efficiency can advance the study of the human mind and enable more efficient exploration algorithms. We hypothesize that humans explore new…

Machine Learning · Computer Science 2022-03-21 Sugandha Sharma , Aidan Curtis , Marta Kryven , Josh Tenenbaum , Ila Fiete

We present a computational and theoretical model of the neural mechanisms underlying human decision-making. We propose a detailed model of the interaction between brain regions, under a proposer-predictor-actor-critic framework.…

Neurons and Cognition · Quantitative Biology 2019-12-18 Seth Herd , Kai Krueger , Ananta Nair , Jessica Mollick , Randall OReilly

Neural signals are characterized by rich temporal and spatiotemporal dynamics that reflect the organization of cortical networks. Theoretical research has shown how neural networks can operate at different dynamic ranges that correspond to…

Neurons and Cognition · Quantitative Biology 2017-07-05 Luca Ambrogioni , Marcel A. J. van Gerven , Eric Maris

The network architecture of the human brain has become a feature of increasing interest to the neuroscientific community, largely because of its potential to illuminate human cognition, its variation over development and aging, and its…

Neurons and Cognition · Quantitative Biology 2016-11-07 Richard F. Betzel , Danielle S. Bassett

The functional network of the brain continually adapts to changing environmental demands. The environmental changes closely connect with changes of active cognitive processes. In recent years, the network approach has emerged as a promising…

Neurons and Cognition · Quantitative Biology 2024-03-13 Ilya Ernston , Arsenii Onuchin , Timofey Adamovich

Recording simultaneous activity of hundreds of neurons is now possible. Existing methods can model such population activity, but do not directly reveal the computations used by the brain. We present a fully unsupervised method that models…

Neurons and Cognition · Quantitative Biology 2020-03-24 Connor Brennan , Alex Proekt

High-throughput methods for yielding the set of connections in a neural system, the connectome, are now being developed. This tutorial describes ways to analyze the topological and spatial organization of the connectome at the macroscopic…

Neurons and Cognition · Quantitative Biology 2011-12-23 Marcus Kaiser

Autonomous navigation in complex and partially observable environments remains a central challenge in robotics. Several bio-inspired models of mapping and navigation based on place cells in the mammalian hippocampus have been proposed. This…

Neural and Evolutionary Computing · Computer Science 2026-01-08 Bekarys Dukenbaev , Andrew Gerstenslager , Alexander Johnson , Ali A. Minai

This publication serves as an overview of clique topology -- a novel matrix analysis technique used to extract structural features from neural activity data that contains hidden nonlinearities. We highlight work done by Gusti et al. which…

Neurons and Cognition · Quantitative Biology 2016-08-12 David Cox

The hippocampus plays a vital role in the diagnosis and treatment of many neurological disorders. Recent years, deep learning technology has made great progress in the field of medical image segmentation, and the performance of related…

Computer Vision and Pattern Recognition · Computer Science 2022-11-16 Heyu Huang , Runmin Cong , Lianhe Yang , Ling Du , Cong Wang , Sam Kwong

Studies suggest that within the hierarchical architecture, the topological higher level possibly represents a conscious category of the current sensory events with slower changing activities. They attempt to predict the activities on the…

Artificial Intelligence · Computer Science 2018-04-19 Junpei Zhong , Tetsuya Ogata , Angelo Cangelosi

When the human brain manifests the birth of organised communication among local and large-scale neuronal populations activity remains undescribed. We report, in resting-state EEG source-estimates of 100 infants at term age, the existence of…

Neurons and Cognition · Quantitative Biology 2020-09-08 Steve Mehrkanoon

Two rate code models -- a reconstruction network model and a control model -- of the hippocampal-entorhinal loop are merged. The hippocampal-entorhinal loop plays a double role in the unified model, it is part of a reconstruction network…

Neurons and Cognition · Quantitative Biology 2007-05-23 A. Lorincz

Mapping is crucial for spatial reasoning, planning and robot navigation. Existing approaches range from metric, which require precise geometry-based optimization, to purely topological, where image-as-node based graphs lack explicit…

Robotics · Computer Science 2024-05-10 Sourav Garg , Krishan Rana , Mehdi Hosseinzadeh , Lachlan Mares , Niko Sünderhauf , Feras Dayoub , Ian Reid

One fascinating aspect of the brain is its ability to process information in a fast and reliable manner. The functional architecture is thought to play a central role in this task, by encoding efficiently complex stimuli and facilitating…

Neurons and Cognition · Quantitative Biology 2016-02-17 Alberto Romagnoni , Jérôme Ribot , Daniel Bennequin , Jonathan D. Touboul

The representations learned by deep neural networks are difficult to interpret in part due to their large parameter space and the complexities introduced by their multi-layer structure. We introduce a method for computing persistent…

Machine Learning · Computer Science 2019-05-31 Thomas Gebhart , Paul Schrater , Alan Hylton
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