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The metabolic processes complexity is at the heart of energy conversion in living organisms and forms a huge obstacle to develop tractable thermodynamic metabolism models. By raising our analysis to a higher level of abstraction, we develop…

Statistical Mechanics · Physics 2020-06-02 C. Goupil , H. Ouerdane , E. Herbert , Y. D'Angelo , C. Goupil

Quantitative studies of cell metabolism are often based on large chemical reaction network models. A steady state approach is suited to analyze phenomena on the timescale of cell growth and circumvents the problem of incomplete experimental…

Molecular Networks · Quantitative Biology 2019-02-20 A. De Martino , D. De Martino , E. Marinari

A metabolic model can be represented as bipartite graph comprising linked reaction and metabolite nodes. Here it is shown how a network of conserved fluxes can be assigned to the edges of such a graph by combining the reaction fluxes with a…

Molecular Networks · Quantitative Biology 2015-05-13 Patrick B. Warren , Silvio M. Duarte Queiros , Janette L. Jones

We study the nonextensive thermodynamics for open systems. On the basis of the maximum entropy principle, the dual power-law q-distribution functions are re-deduced by using the dual particle number definitions and assuming that the…

Statistical Mechanics · Physics 2020-02-26 Yahui Zheng , Haining Yu , Jiulin Du

Linear programming is used as a standard tool for optimising unit commitment or power flows in energy supply systems. For heat supply systems, however, it faces a relevant limitation: For them, energy yield depends on the output…

Optimality principles in nonequilibrium transport networks are linked to a thermodynamic formalism based on generalized transport potentials endowed with Legendre duality and related contact structure. This allows quantifying the distance…

Statistical Mechanics · Physics 2025-06-23 Amilcare Porporato , Shashank Kumar Anand , Salvatore Calabrese , Luca Ridolfi , Lamberto Rondoni

Duality of linear programming is a standard approach to the classical weighted maximum matching problem. From an economic perspective, the dual variables can be regarded as prices of products and payoffs of buyers in a two-sided matching…

Data Structures and Algorithms · Computer Science 2019-12-03 Xiaoming Li , Tao Lin

A new approach to linear programming duality is proposed which relies on quadratic penalization, so that the relation between solutions to the penalized primal and dual problems becomes affine. This yields a new proof of Levin's duality…

Optimization and Control · Mathematics 2013-09-13 Jonathan Korman , Robert J. McCann , Christian Seis

We study the Asymmetric Brownian Energy, a model of heat conduction defined on the one-dimensional finite lattice with open boundaries. The system is shown to be dual to the Symmetric inclusion process with absorbing boundaries. The proof…

Probability · Mathematics 2023-11-03 Gioia Carinci , Francesco Casini , Chiara Franceschini

When writing a constraint program, we have to choose which variables should be the decision variables, and how to represent the constraints on these variables. In many cases, there is considerable choice for the decision variables.…

Artificial Intelligence · Computer Science 2011-07-04 B. Hnich , B. M. Smith , T. Walsh

Thermodynamic computing exploits fluctuations and dissipation in physical systems to efficiently solve various mathematical problems. For example, it was recently shown that certain linear algebra problems can be solved thermodynamically,…

Statistical Mechanics · Physics 2024-01-08 Samuel Duffield , Maxwell Aifer , Gavin Crooks , Thomas Ahle , Patrick J. Coles

This paper explores the potential of Lagrangian duality for learning applications that feature complex constraints. Such constraints arise in many science and engineering domains, where the task amounts to learning optimization problems…

Machine Learning · Computer Science 2020-04-07 Ferdinando Fioretto , Pascal Van Hentenryck , Terrence WK Mak , Cuong Tran , Federico Baldo , Michele Lombardi

In this paper we study the problem of maximizing expected utility from the terminal wealth with proportional transaction costs and random endowment. In the context of the existence of consistent price systems, we consider the duality…

Mathematical Finance · Quantitative Finance 2016-09-06 Yiqing Lin , Junjian Yang

We study the interplay of duality and confinement in certain three-dimensional models induced by the condensation of topological defects. To this end we check for the confinement phenomenon, in both sides of the duality, using the static…

High Energy Physics - Theory · Physics 2015-06-26 Patricio Gaete , Clovis Wotzasek

We consider the problem of optimizing the expected logarithmic utility of the value of a portfolio in a binomial model with proportional transaction costs with a long time horizon. By duality methods, we can find expressions for the…

Portfolio Management · Quantitative Finance 2012-09-25 Christian Bayer , Bezirgen Veliyev

For portfolio optimisation under proportional transaction costs, we provide a duality theory for general cadlag price processes. In this setting, we prove the existence of a dual optimiser as well as a shadow price process in a generalised…

Mathematical Finance · Quantitative Finance 2014-08-27 Christoph Czichowsky , Walter Schachermayer

In this paper, we study expected utility maximization under ratchet and drawdown constraints on consumption in a general incomplete semimartingale market using duality methods. The optimization is considered with respect to two parameters:…

Optimization and Control · Mathematics 2022-07-19 Anastasiya Tanana

It has long been known that the relative entropy of a non-equilibrium ensemble to the corresponding equilibrium ensemble is the excess free energy. We show that the reverse relative entropy also has a thermodynamic interpretation: it is the…

Statistical Mechanics · Physics 2026-02-18 Gavin E. Crooks

Cellular metabolism is globally regulated by various currency metabolites such as ATP, GTP, and NAD(P)H. These metabolites cycle between charged (high-energy) and uncharged (low-energy) states to mediate energy transfer. While distinct…

Biological Physics · Physics 2026-05-22 Jumpei F. Yamagishi , Tetsuhiro S. Hatakeyama

The problem of heat system pricing is considered. A direct extension of locational marginal prices (LMP) in electricity markets to heat systems may lead to revenue inadequate issues. The underlying reason for such a problem is that, unlike…

Systems and Control · Electrical Eng. & Systems 2022-08-18 Xinyi Yi , Ye Guo , Hongbin Sun
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