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Recent experiments with amyloid-beta (Abeta) peptide suggest that formation of toxic oligomers may be an important contribution to the onset of Alzheimer's disease. The toxicity of Abeta oligomers depends on their structure, which is…

Biological Physics · Physics 2009-11-10 B. Urbanc , L. Cruz , F. Ding , D. Sammond , S. Khare , S. V. Buldyrev , H. E. Stanley , N. V. Dokholyan

The 16-22 amino acid fragment of the beta-amyloid peptide associated with the Alzheimer's disease, Abeta, is capable of forming amyloid fibrils. Here we study the aggregation mechanism of Abeta(16-22) peptides by unbiased thermodynamic…

Biomolecules · Quantitative Biology 2009-11-10 Giorgio Favrin , Anders Irbäck , Sandipan Mohanty

The amyloid $\beta$ peptide (A$\beta$42), whose aggregation is associated with Alzheimer's disease, is an amphiphatic peptide with a high propensity to self-assemble. A$\beta$42 has a net negative charge at physiological pH and modulations…

Molecular Networks · Quantitative Biology 2020-08-25 Georg Meisl , Xiaoting Yang , Christopher M. Dobson , Sara Linse , Tuomas P. J. Knowles

Experimental evidence suggests that the folding and aggregation of the amyloid $\beta$-protein (A$\beta$) into oligomers is a key pathogenetic event in Alzheimer's disease (AD). Inhibiting the pathologic folding and oligomerization of…

Biomolecules · Quantitative Biology 2009-11-11 Luis Cruz , Brigita Urbanc , Jose M. Borreguero , Noel D. Lazo , David B. Teplow , H. Eugene Stanley

Analyzing kinetic experiments on protein aggregation using integrated rate laws has led to numerous advances in our understanding of the fundamental chemical mechanisms behind amyloidogenic disorders such as Alzheimer's and Parkinson's…

Amyloid fibers are aggregates of proteins. They are built out of a peptide called $\beta$--amyloid (A$\beta$) containing between 41 and 43 residues, produced by the action of an enzyme which cleaves a much larger protein known as the…

Biomolecules · Quantitative Biology 2009-11-10 G. Tiana , F. Simona , R. A. Broglia , G. Colombo

Abeta is a disordered peptide central to Alzheimer's Disease. Aggregation of Abeta has been widely explored, but its molecular crowding less so. The synaptic cleft where Abeta locates only holds 60-70 water molecules along its width. We…

Biological Physics · Physics 2019-08-27 Rukmankesh Mehra , Kasper P. Kepp

The formation of amyloid fibrils comprising amyloid $\beta$ (A$\beta$) peptides is associated with the pathology of Alzheimer's disease. In this study, we theoretically investigated the A$\beta$ structure at the fibril end using the density…

Biological Physics · Physics 2025-05-15 Yasuhiro Oishi , Motoharu Kitatani , Kichitaro Nakajima , Hirotsugu Ogi , Koichi Kusakabe

We introduce and study a new model for the progression of Alzheimer's disease incorporating the interactions of A$\beta$-monomers, oligomers, microglial cells and interleukins with neurons through different mechanisms such as protein…

Biological Physics · Physics 2022-12-13 Ionel Ciuperca , Laurent Pujo-Menjouet , Leon Matar-Tine , Nicolas Torres , Vitaly Volpert

Alzheimer's disease (AD) is a prominent, worldwide, age-related neurodegenerative disease that currently has no systemic treatment. Strong evidence suggests that permeable amyloid-beta peptide (Abeta) oligomers, astrogliosis and reactive…

Neurons and Cognition · Quantitative Biology 2023-06-23 Hina Shaheen , Roderick Melnik , The Alzheimer's Disease Neuroimaging Initiative

The abnormal aggregation of extracellular amyloid-$\beta$ (A\beta) in senile plaques resulting in calcium (Ca^{+2}) dyshomeostasis is one of the primary symptoms of Alzheimer's disease (AD). Significant research efforts have been devoted in…

Neurons and Cognition · Quantitative Biology 2023-06-21 Hina Shaheen , Roderick Melnik , Sundeep Singh

Alzheimer's disease (AD) is driven by the accumulation of amyloid-beta (Abeta) proteins in the brain, leading to memory loss and cognitive decline. While monoclonal antibodies targeting Abetahave been approved, optimizing their use to…

Quantitative Methods · Quantitative Biology 2025-03-13 Kobra Rabiei , Jeffrey R. Petrella , Suzanne Lenhart , Chun Liu , P. Murali Doraiswamy , Wenrui Hao

The presence of oligomeric aggregates, which is often observed during the process of amyloid formation, has recently attracted much attention since it has been associated with neurodegenerative conditions such as Alzheimer's and Parkinson's…

Biomolecules · Quantitative Biology 2009-01-14 Stefan Auer , Filip Meersman , Christopher M. Dobson , Michele Vendruscolo

Inspired by recent suggestions that the Alzheimer's amyloid beta peptide (A beta) can insert into cell membranes and form harmful ion channels, we model insertion of the 40 and 42 residue forms of the peptide into cell membranes using a…

Biological Physics · Physics 2009-11-10 David L. Mobley , Daniel L. Cox , Rajiv R. P. Singh , Michael W. Maddox , Marjorie L. Longo

Alzheimer's disease (AD) is a progressive neurodegenerative disorder that severely impairs survival and quality of life. While anti-amyloid beta (Abeta) therapies can slow disease progression, their efficacy depends on personalized dosing…

Optimization and Control · Mathematics 2025-11-10 Sun Lee , Chiu-Yen Kao , Zhiyuan Li , Tingting Dan , Guorong Wu , Wenrui Hao

Protein oligomers have been implicated as toxic agents in a wide range of amyloid-related diseases. Yet it has remained unsolved whether the oligomers are a necessary step in the formation of amyloid fibrils, or just a dangerous by-product.…

Biomolecules · Quantitative Biology 2014-12-03 Anđela Šarić , Yassmine C. Chebaro , Tuomas P. J. Knowles , Daan Frenkel

Amyloid beta peptides (A\b{eta}), implicated in Alzheimers disease (AD), interact with the cellular membrane and induce amyloid toxicity. The composition of cellular membranes changes in aging and AD. We designed multi component lipid…

Biological Physics · Physics 2017-11-01 Elizabeth Drolle , Alexander Negoda , Keely Hammond , Evgeny Pavlov , Zoya Leonenko

Amyloid-$\beta$ (A$\beta$) plaques in conjunction with hyperphosphorylated tau proteins in the form of neurofibrillary tangles are the two neuropathological hallmarks of Alzheimer's disease. It is well-known that the identification of…

Alzheimer's disease (AD) is a common form of dementia observed in the elderly due to neurodegenerative disorder and dysfunction. This arises from alterations in synaptic functioning of neurons leading to cognitive impairment and memory…

Neurons and Cognition · Quantitative Biology 2010-11-19 V. Resmi , G. Ambika , R. E. Amritkar , G. Rangarajan

The use of amyloid-beta (A$\beta$) clearance to support regulatory approvals of drugs in Alzheimer's disease (AD) remains controversial. We evaluate A$\beta$ as a potential trial-level surrogate endpoint for clinical function in AD using a…

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