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We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

Populations and Evolution · Quantitative Biology 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

Recent studies show indication of the effectiveness of synchronization as a data assimilation tool for small or meso-scale forecast when less number of variables are observed frequently. Our main aim here is to understand the effects of…

Chaotic Dynamics · Physics 2015-03-19 Md. Nurujjaman , Sumanth Shivamurthy , Amit Apte , Tanu Singla , P. Parmananda

We study effects of independent white noise on synchronization phenomena in ensembles of coupled limit cycle oscillators with different native frequencies. We consider a simple model where the ensemble consists of two inter-connected…

Statistical Mechanics · Physics 2011-01-04 K. Okumura , A. Ichiki , M. Shiino

Ecological communities are composed of species interactions that respond to environmental fluctuations. Despite increasing evidence of temporal variation in these interactions, most theoretical frameworks remain rooted in static…

Stochastic phenomena in which the noise amplitude is proportional to the fluctuating variable itself, usually called {\it multiplicative noise}, appear ubiquitously in physics, biology, economy and social sciences. The properties of…

Condensed Matter · Physics 2007-05-23 Miguel A. Munoz

Spontaneous synchronization is a remarkable collective effect observed in nature, whereby a population of oscillating units, which have diverse natural frequencies and are in weak interaction with one another, evolves to spontaneously…

Adaptation and Self-Organizing Systems · Physics 2018-08-23 Stefano Gherardini , Shamik Gupta , Stefano Ruffo

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-18 Chengyi Tu , Samir Suweis , Jacopo Grillib , Marco Formentin , Amos Maritan

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-21 Chengyi Tu , Samir Suweis , Jacopo Grilli , Marco Formentin , Amos Maritan

In this paper we study the long term dynamics of two prey species and one predator species. In the deterministic setting, if we assume the interactions are of Lotka-Volterra type (competition or predation), the long term behavior of this…

Probability · Mathematics 2021-11-29 Alexandru Hening , Dang Nguyen , Nhu Nguyen , Harrison Watts

In contrast to the neutral population cycles of the deterministic mean-field Lotka--Volterra rate equations, including spatial structure and stochastic noise in models for predator-prey interactions yields complex spatio-temporal structures…

Populations and Evolution · Quantitative Biology 2013-10-16 Ulrich Dobramysl , Uwe C. Tauber

Environmental noise can cause an exponential reduction in the mean time to extinction (MTE) of an isolated population. We study this effect on an example of a stochastic birth-death process with rates modulated by a colored Gaussian noise.…

Populations and Evolution · Quantitative Biology 2015-05-13 Alex Kamenev , Baruch Meerson , Boris Shklovskii

We provide transition rates for Markov counting systems subject to correlated environmental noises motivated by multi-strain disease models. Such noises induce simultaneous counts, which can help model infinitesimal count correlation…

Probability · Mathematics 2013-12-23 Carles Bretó

We show that spatial extensions of many-species population dynamics models, such as the Lotka-Volterra model with random interactions we focus on in this work, generically exhibit scale-free correlation functions of population sizes in the…

Statistical Mechanics · Physics 2025-12-09 Thibaut Arnoulx de Pirey

Game theory ideas provide a useful framework for studying evolutionary dynamics in a well-mixed environment. This approach, however, typically enforces a strictly fixed overall population size, deemphasizing natural growth processes. We…

Populations and Evolution · Quantitative Biology 2016-08-30 Thiparat Chotibut , David R. Nelson

We investigate the behavior of the residence times density function for different nonlinear dynamical systems with limit cycle behavior and perturbed parametrically with a colored noise. We present evidence that underlying the stochastic…

chao-dyn · Physics 2009-10-31 Juan L. Cabrera , J. Gorro~nogoitia , F. J. de la Rubia

The basic phenomenology of experimentally observed synchronization (i.e., a stochastic phase locking) of identical, beating flagella of a biflagellate alga is known to be captured well by a minimal model describing the dynamics of coupled,…

Soft Condensed Matter · Physics 2019-02-28 V. Dotsenko , A. Maciolek , G. Oshanin , O. A. Vasilyev , S. Dietrich

In animal groups, individual decisions are best characterised by probabilistic rules. Furthermore, animals of many species live in small groups. Probabilistic interactions among small numbers of individuals lead to a so called intrinsic…

Populations and Evolution · Quantitative Biology 2020-04-23 Jitesh Jhawar , Vishwesha Guttal

Driven by various kinds of noise, ensembles of limit cycle oscillators can synchronize. In this letter, we propose a general formulation of synchronization of the oscillator ensembles driven by common colored noise with an arbitrary power…

Chaotic Dynamics · Physics 2014-02-11 W. Kurebayashi , K. Fujiwara , T. Ikeguchi

We consider the phenomenon of mutual synchronization in a fundamental quantum system of two detuned quantum harmonic oscillators dissipating into the environment. We identify the conditions leading to this spontaneous phenomenon showing…

Quantum Physics · Physics 2012-05-08 Gian Luca Giorgi , Fernando Galve , Gonzalo Manzano , Pere Colet , Roberta Zambrini

We investigate the synchronization dynamics of two coupled noise-driven FitzHugh-Nagumo systems, representing two neural populations. For certain choices of the noise intensities and coupling strength, we find cooperative stochastic…

Adaptation and Self-Organizing Systems · Physics 2025-07-29 Philipp Hövel , Sarang A. Shah , Markus A. Dahlem , Eckehard Schöll
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