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This paper is an extensive survey of literature on complex network communities and clustering. Complex networks describe a widespread variety of systems in nature and society especially systems composed by a large number of highly…

Social and Information Networks · Computer Science 2015-03-24 Biswajit Saha , Amitabha Mandal , Soumendu Bikas Tripathy , Debaprasad Mukherjee

Graphs have become increasingly popular in modeling structures and interactions in a wide variety of problems during the last decade. Graph-based clustering and semi-supervised classification techniques have shown impressive performance.…

Machine Learning · Computer Science 2020-09-01 Zhao Kang , Chong Peng , Qiang Cheng , Xinwang Liu , Xi Peng , Zenglin Xu , Ling Tian

In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically,…

Physics and Society · Physics 2015-05-30 Hua-Wei Shen , Xue-Qi Cheng , Jia-Feng Guo

Currently, data-driven discovery in biological sciences resides in finding segmentation strategies in multivariate data that produce sensible descriptions of the data. Clustering is but one of several approaches and sometimes falls short…

Quantitative Methods · Quantitative Biology 2022-08-12 Richard Tjörnhammar

Graph clustering is a fundamental problem in unsupervised learning, with numerous applications in computer science and in analysing real-world data. In many real-world applications, we find that the clusters have a significant high-level…

Data Structures and Algorithms · Computer Science 2023-01-02 Peter Macgregor

The study of the topological structure of complex networks has fascinated researchers for several decades, and today we have a fairly good understanding of the types and reoccurring characteristics of many different complex networks.…

Social and Information Networks · Computer Science 2014-06-23 Matthieu Roy , Stefan Schmid , Gilles Trédan

Networks with underlying metric spaces attract increasing research attention in network science, statistical physics, applied mathematics, computer science, sociology, and other fields. This attention is further amplified by the current…

Physics and Society · Physics 2020-04-22 Marian Boguna , Dmitri Krioukov , Pedro Almagro , M. Angeles Serrano

We propose a Markov chain simulation method to generate simple connected random graphs with a specified degree sequence and level of clustering. The networks generated by our algorithm are random in all other respects and can thus serve as…

Discrete Mathematics · Computer Science 2010-02-09 Shweta Bansal , Shashank Khandelwal , Lauren Ancel Meyers

Scale-free (SF) network structures observed in many complex systems affect the size of epidemic spreading and the efficiency of communication, statistical properties of the degree-degree correlations are important for studying the average…

Disordered Systems and Neural Networks · Physics 2007-05-23 Yukio Hayashi

We model a social-encounter network where linked nodes match for reproduction in a manner depending probabilistically on each node`s attractiveness. The developed model reveals that increasing either the network`s mean degree or the…

Physics and Society · Physics 2017-06-22 S. Dipple , T. Jia , T. Caraco , G. Korniss , B. K. Szymanski

Combinations of random and preferential growth for both on-growing and stationary networks are studied and a hierarchical topology is observed. Thus for real world scale-free networks which do not exhibit hierarchical features preferential…

Disordered Systems and Neural Networks · Physics 2015-06-24 Andreas Gronlund , Kim Sneppen , Petter Minnhagen

Network architecture design is very important for the optimization of industrial networks. The type of network architecture can be divided into small-scale network and large-scale network according to its scale. Graph theory is an efficient…

Social and Information Networks · Computer Science 2022-09-20 Chao Dong , Xiaoxiong Xiong , Qiulin Xue , Zhengzhen Zhang , Kai Niu , Ping Zhang

As network research becomes more sophisticated, it is more common than ever for researchers to find themselves not studying a single network but needing to analyze sets of networks. An important task when working with sets of networks is…

Social and Information Networks · Computer Science 2019-07-26 James P. Bagrow , Erik M. Bollt

The social networks that infectious diseases spread along are typically clustered. Because of the close relation between percolation and epidemic spread, the behavior of percolation in such networks gives insight into infectious disease…

Quantitative Methods · Quantitative Biology 2009-05-14 Joel C Miller

Network science plays an increasingly important role to model complex data in many scientific disciplines. One notable feature of network organization is community structure, which refers to clusters of tightly interconnected nodes. A…

Social and Information Networks · Computer Science 2016-03-18 Dimitri Van De Ville

The question of how clustering (non-zero density of triangles) in networks affects their bond percolation threshold has important applications in a variety of disciplines. Recent advances in modelling highly-clustered networks are employed…

Statistical Mechanics · Physics 2013-06-06 James P. Gleeson , Sergey Melnik , Adam Hackett

Relevance and importance are the main factors when humans build network connections. We propose an evolutionary network model based on preferential attachment(PA) considering these factors. We analyze and compute several important features…

Physics and Society · Physics 2014-12-25 Weituo Zhang , Chjan Lim

The performance of attractor neural networks has been shown to depend crucially on the heterogeneity of the underlying topology. We take this analysis a step further by examining the effect of degree-degree correlations -- or assortativity…

Disordered Systems and Neural Networks · Physics 2015-05-20 Sebastiano de Franciscis , Samuel Johnson , Joaquín J. Torres

Analysis of higher-order organizations, usually small connected subgraphs called motifs, is a fundamental task on complex networks. This paper studies a new problem of testing higher-order clusterability: given query access to an undirected…

Data Structures and Algorithms · Computer Science 2023-10-09 Yifei Li , Donghua Yang , Jianzhong Li

Protein representation learning is a challenging task that aims to capture the structure and function of proteins from their amino acid sequences. Previous methods largely ignored the fact that not all amino acids are equally important for…

Machine Learning · Computer Science 2024-04-02 Ruijie Quan , Wenguan Wang , Fan Ma , Hehe Fan , Yi Yang
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