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Bacteria populate the colon where they replicate and migrate in response to nutrient availability. Here I model the colon bacterial population as a sandpile model, the colon-pile. Sand addition mimics bacterial replication and grains…

Populations and Evolution · Quantitative Biology 2020-03-09 Alexei Vazquez

In the subtropical gyres, phytoplankton rely on eddies for transporting nutrients from depth to the euphotic zone. But, what controls the rate of nutrient supply for new production? We show that vertical nutrient flux depends both on the…

Populations and Evolution · Quantitative Biology 2022-03-02 Mara Freilich , Glenn Flierl , Amala Mahadevan

We studied the self-diffusion of colloidal ellipsoids in a monolayer near a flat wall by video microscopy. The image processing algorithm can track the positions and orientations of ellipsoids with sub-pixel resolution. The translational…

Soft Condensed Matter · Physics 2015-05-19 Zhongyu Zheng , Yilong Han

The presence of massive black holes (BHs) exceeding $10^9\,{\rm M}_{\odot}$ already at redshift $z > 6$ challenges standard models of BH growth. Super-Eddington (SE) accretion has emerged as a promising mechanism to solve this issue, yet…

Topology of polymer profoundly influences on its behavior. However, its effect on imbibition dynamics remains poorly understood. In the present work, capillary filling (during imbibition and following full imbibition) of star polymer melts…

Soft Condensed Matter · Physics 2026-03-11 Jianwei Zhang , Jinyu Lei , Pu Feng , George Floudas , Guangzhao Zhang , Jiajia Zhou

High-energy synchrotron x-rays are used to track grain rotations and the micromechanical evolution of a hexagonal Ti-7Al microstructure as it is cyclically loaded below its macroscopic yield stress. The evolution of the grains through 200…

Materials Science · Physics 2020-10-02 Rachel E. Lim , Joel V. Bernier , Darren C. Pagan , Paul A. Shade , Anthony D. Rollett

The behavior of a system of two-dimensional elongated particles (discorectangles) packed into a slit between two parallel walls was analyzed using a simulation approach. The packings were produced using the random sequential adsorption…

Soft Condensed Matter · Physics 2021-12-09 Nikolai I. Lebovka , Mykhailo O. Tatochenko , Nikolai V. Vygornitskii , Yuri Yu. Tarasevich

For biologically relevant macromolecules such as intrinsically disordered proteins, internal degrees of freedom that allow for shape changes have a large influence on both the motion and function of the compound. A detailed understanding of…

It has been consensus that star-disk systems accrete most of their mass and angular momentum during the collapse of a prestellar core, such that the rotational direction of a system is equivalent to the net rotation of the core. Recent…

Solar and Stellar Astrophysics · Physics 2024-10-16 M. Kuffmeier , J. E. Pineda , D. Segura-Cox , T. Haugbølle

The endoplasmic reticulum (ER), a cellular organelle that forms a cell-spanning network of tubes and sheets, is an important location of protein synthesis and folding. When the ER experiences sustained unfolded protein stress, IRE1 proteins…

Biological Physics · Physics 2023-05-02 Liam T Kischuck , Aidan I Brown

Assembly of protein complexes like virus shells, the centriole, the nuclear pore complex or the actin cytoskeleton is strongly determined by their spatial structure. Moreover it is becoming increasingly clear that the reversible nature of…

Subcellular Processes · Quantitative Biology 2014-05-13 Heinrich C. R. Klein , Ulrich S. Schwarz

Protostellar feedback, both radiation and bipolar outflows, dramatically affects the fragmentation and mass accretion from star-forming cores. We use ORION, an adaptive mesh refinement gravito-radiation-hydrodynamics code, to simulate the…

Solar and Stellar Astrophysics · Physics 2015-06-03 Charles E. Hansen , Richard I. Klein , Christopher F. McKee , Robert T. Fisher

We experimentally investigate the profile and morphology of the ring-like deposits obtained after evaporation of a sessile water droplet containing polystyrene colloidal particles on a hydrophilic glass substrate. In particular, the coupled…

Soft Condensed Matter · Physics 2019-04-16 Laxman K. Malla , Rajneesh Bhardwaj , Adrian Neild

The biogenesis of lipid droplets (LD) in the yeast Saccharomyces cerevisiae was theoretically investigated on basis of a biophysical model. In accordance with the prevailing model of LD formation, we assumed that neutral lipids oil-out…

Subcellular Processes · Quantitative Biology 2009-10-30 J. Zanghellini , F. Wodlei , H. -H. von Gruenberg

The size of mature oocytes is similar across mammalian species, yet the size of ovarian follicles increases with species size, with some ovarian follicles reaching diameters more than 1000-fold the size of the enclosed oocyte. Here we show…

Tissues and Organs · Quantitative Biology 2013-11-14 M. Bächler , D. Menshykau , Ch. De Geyter , D. Iber

We perform particle resolved experimental studies on the heterogeneous crystallisation process of two compo- nent mixtures of hard spheres. The components have a size ratio of 0.39. We compared these with molecular dynamics simulations of…

Soft Condensed Matter · Physics 2017-10-25 I. Ríos de Anda , F. Turci , R. Sear , C. P. Royall

We study the time evolution of entanglement created by local or extended excitations upon the ground state of a free-fermion chain. A single particle or hole excitation produces a single bit of excess entropy for large times and subsystem…

Statistical Mechanics · Physics 2021-10-15 Viktor Eisler

Planet engulfment can be inferred from enhancement of refractory elements in the photosphere of the engulfing star following accretion of rocky planetary material. Such refractory enrichments are subject to stellar interior mixing…

Solar and Stellar Astrophysics · Physics 2023-02-09 Aida Behmard , Jason Sevilla , Jim Fuller

The fast blood stream of animals is associated with large shear stresses. Consequently, blood cells have evolved a special morphology and a specific internal architecture allowing them to maintain their integrity over several weeks. For…

Subcellular Processes · Quantitative Biology 2022-10-12 Serge Dmitrieff , Adolfo Alsina , Aastha Mathur , François Nédélec

Digestion in the small intestine is the result of complex mechanical and biological phenomena which can be modelled at different scales. In a previous article, we introduced a system of ordinary differential equations for describing the…

Analysis of PDEs · Mathematics 2011-09-12 Masoomeh Taghipoor , Guy Barles , Christine Georgelin , Jean-René Licois , Philippe Lescoat
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