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Gene regulatory networks are collections of genes that interact with one other and with other substances in the cell. By measuring gene expression over time using high-throughput technologies, it may be possible to reverse engineer, or…

Applications · Statistics 2011-09-08 Andrea Rau , Florence Jaffrézic , Jean-Louis Foulley , R. W. Doerge

Given non-sequential snapshots from instances of a dynamical system, we design a compressed sensing based algorithm that reconstructs the dynamical system. On the theoretical side, we show that: (1) successful reconstruction is possible…

Genomics · Quantitative Biology 2025-11-24 Cliff Stein , Pratik Worah

Mathematical modeling is a powerful tool for describing, predicting, and understanding complex phenomena exhibited by real-world systems. However, identifying the equations that govern a system's dynamics from experimental data remains a…

Neural and Evolutionary Computing · Computer Science 2024-12-05 Omar Rodríguez-Abreo , José Luis Aragón , Mario Alan Quiroz-Juárez

We consider the problem of reconstructing the dynamic state matrix of transmission power grids from time-stamped PMU measurements in the regime of ambient fluctuations. Using a maximum likelihood based approach, we construct a family of…

Systems and Control · Computer Science 2017-10-31 Andrey Y. Lokhov , Marc Vuffray , Dmitry Shemetov , Deepjyoti Deka , Michael Chertkov

In this paper the focus is on subsampling as well as reconstructing the second-order statistics of signals residing on nodes of arbitrary undirected graphs. Second-order stationary graph signals may be obtained by graph filtering zero-mean…

Information Theory · Computer Science 2018-05-08 Sundeep Prabhakar Chepuri , Geert Leus

Bilinear dynamical systems are ubiquitous in many different domains and they can also be used to approximate more general control-affine systems. This motivates the problem of learning bilinear systems from a single trajectory of the…

Machine Learning · Computer Science 2022-08-31 Yahya Sattar , Samet Oymak , Necmiye Ozay

"Module networks" are a framework to learn gene regulatory networks from expression data using a probabilistic model in which coregulated genes share the same parameters and conditional distributions. We present a method to infer ensembles…

Quantitative Methods · Quantitative Biology 2009-04-09 Tom Michoel , Riet De Smet , Anagha Joshi , Kathleen Marchal , Yves Van de Peer

This paper addresses a structural design problem in control systems, and explicitly takes into consideration the possible application to large-scale systems. More precisely, we aim to determine and characterize the minimum number of…

Optimization and Control · Mathematics 2016-06-13 Sergio Pequito , George J. Pappas

In this paper, a purely measurement-based method is proposed to estimate the dynamic system state matrix by applying the regression theorem of the multivariate Ornstein-Uhlenbeck process. The proposed method employs a recursive algorithm to…

Signal Processing · Electrical Eng. & Systems 2019-05-29 Hao Sheng , Xiaozhe Wang

In this paper we study a class of dynamical systems generated by iterations of multivariate permutation polynomial systems which lead to polynomial growth of the degrees of these iterations. Using these estimates and the same techniques…

Number Theory · Mathematics 2010-01-10 Alina Ostafe

We develop methods to efficiently reconstruct the topology and line parameters of a power grid from the measurement of nodal variables. We propose two compressed sensing algorithms that minimize the amount of necessary measurement resources…

Systems and Control · Computer Science 2019-07-10 Farnaz Basiri , Jose Casadiego , Marc Timme , Dirk Witthaut

We introduce the dynamics mode decomposition for monitoring wide-area power grid networks from sparse measurement data. The mathematical framework fuses data from multiple sensors based on multivariate statistics, providing accurate full…

Pattern Formation and Solitons · Physics 2019-06-11 J. Jorge Ramos , J. Nathan Kutz

Despite recent progress in our understanding of complex dynamic networks, it remains challenging to devisesufficiently accurate models to observe, control or predict the state of real systems in biology, economics or other fields. A largely…

Dynamical Systems · Mathematics 2019-12-11 Dominik Kahl , Philipp Wendland , Matthias Neidhardt , Andreas Weber , Maik Kschischo

Parametric models abstract part of the specification of dynamical models by integral parameters. They are for example used in computational systems biology, notably with parametric regulatory networks, which specify the global architecture…

Logic in Computer Science · Computer Science 2018-11-30 Stefan Haar , Juraj Kolčák , Loïc Paulevé

A Multiregression Dynamic Model (MDM) is a class of multivariate time series that represents various dynamic causal processes in a graphical way. One of the advantages of this class is that, in contrast to many other Dynamic Bayesian…

Methodology · Statistics 2015-05-27 Lilia Costa , Jim Smith , Thomas Nichols , James Cussens , Eugene P. Duff , Tamar R. Makin

Machine learning-based compact models provide a rapid and efficient approach for estimating device behavior across multiple input parameter variations. In this study, we introduce two reverse-design algorithms that utilize these compact…

Emerging Technologies · Computer Science 2025-08-29 Diego Ferrer , Jack Hutchins , Revanth Koduru , Sumeet Kumar Gupta , Admedullah Aziz

Identifying a linear system model from data has wide applications in control theory. The existing work on finite sample analysis for linear system identification typically uses data from a single system trajectory under i.i.d random inputs,…

Systems and Control · Electrical Eng. & Systems 2023-09-19 Lei Xin , George Chiu , Shreyas Sundaram

The magnetic inverse source problem of reconstructing the positions and currents of very long parallel conductors is considered in a two-dimensional situation, with applications to power line measurements. The input data is the magnetic…

Mathematical Physics · Physics 2013-02-27 Martin Norgren

We consider a class of models describing an ensemble of identical interacting agents subject to multiplicative noise. In the thermodynamic limit, these systems exhibit continuous and discontinuous phase transitions in a, generally,…

Statistical Mechanics · Physics 2023-10-27 Niccolò Zagli , Grigorios A. Pavliotis , Valerio Lucarini , Alexander Alecio

Linear dynamical systems are the foundational statistical model upon which control theory is built. Both the celebrated Kalman filter and the linear quadratic regulator require knowledge of the system dynamics to provide analytic…

Optimization and Control · Mathematics 2023-01-24 Ainesh Bakshi , Allen Liu , Ankur Moitra , Morris Yau