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Evolutionary dynamics is often viewed as a subtle process of change accumulation that causes a divergence among organisms and their genomes. However, this interpretation is an inheritance of a gradualistic view that has been challenged at…

Populations and Evolution · Quantitative Biology 2018-07-27 Jacobo Aguirre , Pablo Catalán , José A. Cuesta , Susanna Manrubia

Evolution in finite populations is often modelled using the classical Moran process. Over the last ten years this methodology has been extended to structured populations using evolutionary graph theory. An important question in any such…

Populations and Evolution · Quantitative Biology 2015-05-25 Karan Pattni , Mark Broom , Jan Rychtar , Lara J. Silvers

The evolution of dispersal rate is studied with a model of several local populations linked by dispersal. Three dispersal strategies are considered where all, half, or none of the offspring disperse. The spatial scale (number of patches)…

Populations and Evolution · Quantitative Biology 2019-03-12 Emmanuel Paradis

Many real-world complex systems, such as epidemic spreading networks and ecosystems, can be modeled as networked dynamical systems that produce multivariate time series. Learning the intrinsic dynamics from observational data is pivotal for…

Machine Learning · Computer Science 2024-12-30 Yanna Ding , Zijie Huang , Malik Magdon-Ismail , Jianxi Gao

Time-varying networks describe a wide array of systems whose constituents and interactions evolve over time. They are defined by an ordered stream of interactions between nodes, yet they are often represented in terms of a sequence of…

Statistical Mechanics · Physics 2013-10-23 Bruno Ribeiro , Nicola Perra , Andrea Baronchelli

In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can…

Populations and Evolution · Quantitative Biology 2013-12-19 D. B. Weissman , O. Hallatschek

We consider the problem of determining the time evolution of a trait distribution in a mathematical model of non-uniform populations with parametric heterogeneity. This means that we consider only heterogeneous populations in which…

Populations and Evolution · Quantitative Biology 2018-09-25 Georgy P. Karev , Artem S. Novozhilov

We propose a model for the growth of weighted networks that couples the establishment of new edges and vertices and the weights' dynamical evolution. The model is based on a simple weight-driven dynamics and generates networks exhibiting…

Disordered Systems and Neural Networks · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Alessandro Vespignani

Population structure can have a significant effect on evolution. For some systems with sufficient symmetry, analytic results can be derived within the mathematical framework of evolutionary graph theory which relate to the outcome of the…

Populations and Evolution · Quantitative Biology 2019-03-11 Christopher E. Overton , Mark Broom , Christoforos Hadjichrysanthou , Kieran J. Sharkey

Network properties govern the rate and extent of spreading processes on networks, from simple contagions to complex cascades. Recent advances have extended the study of spreading processes from static networks to temporal networks, where…

Physics and Society · Physics 2019-11-05 Eun Lee , James Moody , Peter J. Mucha

A general population evolution model is considered. Any individual of the population is characterized by its score. Certain general conditions are assumed concerning the number of the individuals and their scores. Asymptotic theorems are…

Probability · Mathematics 2016-04-07 I. Fazekas , Cs. Noszály , A. Perecsényi

Recent research has shown the deep impact of the dynamics of human interactions (or temporal social networks) on the spreading of information, opinion formation, etc. In general, the bursty nature of human interactions lowers the…

Physics and Society · Physics 2015-06-16 Giovanna Miritello , Rubén Lara , Esteban Moro

Conventional studies of network growth models mainly look at the steady state degree distribution of the graph. Often long time behavior is considered, hence the initial condition is ignored. In this contribution, the time evolution of the…

Physics and Society · Physics 2013-05-10 Babak Fotouhi , Michael Rabbat

Temporal networks of face-to-face interactions between individuals are useful proxies of the dynamics of social systems on fast time scales. Several empirical statistical properties of these networks have been shown to be robust across a…

Physics and Society · Physics 2023-02-03 Didier Le Bail , Mathieu Génois , Alain Barrat

We propose a modeling framework for growing multiplexes where a node can belong to different networks. We define new measures for multiplexes and we identify a number of relevant ingredients for modeling their evolution such as the coupling…

Physics and Society · Physics 2013-08-01 Vincenzo Nicosia , Ginestra Bianconi , Vito Latora , Marc Barthelemy

The interaction between natural selection and random mutation is frequently debated in recent years. Does similar dilemma also exist in the evolution of real networks such as biological networks? In this paper, we try to discuss this issue…

Statistical Mechanics · Physics 2009-01-07 Zhen Shao , Hai-jun Zhou

New technologies allow to store vast amount of data about users interaction. From those data the social network can be created. Additionally, because usually also time and dates of this activities are stored, the dynamic of such network can…

Social and Information Networks · Computer Science 2012-10-19 Stanisław Saganowski , Piotr Bródka , Przemysław Kazienko

The centrality of a node within a network, however it is measured, is a vital proxy for the importance or influence of that node, and the differences in node centrality generate hierarchies and inequalities. If the network is evolving in…

Social and Information Networks · Computer Science 2023-01-09 Matthew Russell Barnes , Vincenzo Nicosia , Richard G. Clegg

The structure of a network dramatically affects the spreading phenomena unfolding upon it. The contact distribution of the nodes has long been recognized as the key ingredient in influencing the outbreak events. However, limited knowledge…

Physics and Society · Physics 2014-07-30 Luca Ferreri , Paolo Bajardi , Mario Giacobini , Silvia Perazzo , Ezio Venturino

We describe a simple spatial model of urban growth for systems of cities at the macroscopic scale, which combines direct interaction between cities and an indirect effect of physical network flows as population growth drivers. The model is…

Physics and Society · Physics 2018-04-26 Juste Raimbault