Related papers: Two-state dynamics for replicating two-strand syst…
We calculate the spectrum of torsional vibrations of a double-stranded structure that models the double helix of the DNA. We come to the conclusion that within the framework of the model elementary excitations may display an asymmetry as…
In the KdV context we put forward a continuous version of the binary Darboux transformation (aka the double commutation method). Our approach is based on the Riemann-Hilbert problem and yields a new explicit formula for perturbation of the…
Exact self-consistent soliton dynamics based on the Bogoliubov-de Gennes (BdG) formalism in unconventional Fermi superfluids/superconductors possessing an $SU(d)$-symmetric two-body interaction is presented. The derivation is based on the…
In this paper we consider a class of systems of two coupled real scalar fields in bidimensional spacetime, with the main motivation of studying classical or linear stability of soliton solutions. Firstly, we present the class of systems and…
A splicing system is a formal model of a recombinant behaviour of sets of double stranded DNA molecules when acted on by restriction enzymes and ligase. In this survey we will concentrate on a specific behaviour of a type of splicing…
Polymer topology, which plays a principal role in the rheology of polymeric fluids, and non-equilibrium materials, which exhibit time-varying rheological properties, are topics of intense investigation. Here, we push composites of circular…
In this paper, via the generalized Darboux transformation, rational soliton solutions are derived for the parity-time-symmetric nonlocal nonlinear Schr\"{o}dinger (NLS) model with the defocusing-type nonlinearity. We find that the…
Darboux transformation is one of the methods used in solving nonlinear evolution equation. Basically, the Darboux transformation is a linear algebra formulation of the solutions of the Zakharov-Shabat system of equations associated with the…
We consider a simple model system supporting stable solitons in two dimensions. The system is the parametrically driven damped nonlinear Schr\"odinger equation, and the soliton stabilises for sufficiently strong damping. The purpose of this…
Assume a lower-dimensional solitonic structure embedded in a higher dimensional space, e.g., a 1D dark soliton embedded in 2D space, a ring dark soliton in 2D space, a spherical shell soliton in 3D space etc. By extending the Landau…
The paper deals with the two-state (opening-closing of base pairs) model used to describe the fluctuation dynamics of a single bubble formation. We present an exact solution for the discrete and finite size version of the model that…
A two-type continuous-state branching process in varying environments is constructed as the pathwise unique solution of a system of stochastic equations driven by time-space noises, where the pathwise uniqueness is derived from a comparison…
Starting with a time-independent Hamiltonian $h$ and an appropriately chosen solution of the von Neumann equation $i\dot\rho(t)=[ h,\rho(t)]$ we construct its binary-Darboux partner $h_1(t)$ and an exact scattering solution of…
The renormalization method based on the Newton-Maclaurin expansion is applied to study the transient behavior of the solutions to the difference equations as they tend to the steady-states. The key and also natural step is to make the…
Two binary (integral type) Darboux transformations for the KdV hierarchy with self-consistent sources are proposed. In contrast with the Darboux transformation for the KdV hierarchy, one of the two binary Darboux transformations provides…
The rotor-router walk model is proposed to describe the sub-diffusive behavior of double-strand breaks in chromatin caused by external factors such as heavy ions, $\gamma$-irradiation, etc. The mechanism of the double-strand breaks…
Two coupled two-level systems placed under external time-dependent magnetic fields are modeled by a general Hamiltonian endowed with a symmetry that enables us to reduce the total dynamics into two independent two-dimensional sub-dynamics.…
We review some of the fundamental notions associated to the theory of solitons. More precisely, we focus on the issue of conservation laws via the existence of the Lax pair and also on methods that provide solutions to partial or ordinary…
As is known, a solitary pulse in the complex cubic Ginzburg-Landau (GL) equation is unstable. We demonstrate that a system of two linearly coupled GL equations with gain and dissipation in one subsystem and pure dissipation in another…
In this paper, we study the Cauchy problem and multi-soliton solutions for a two-component short pulse system. For the Cauchy problem, we first prove the existence and uniqueness of solution with an estimate of the analytic lifespan, and…