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We study theoretically the unzipping of a double stranded DNA from a condensed globule state by an external force. At constant force, we find that the double stranded DNA unzips an at critical force Fc and the number of unzipped monomers M…

Soft Condensed Matter · Physics 2007-05-23 Pui-Man Lam , J. C. Levy

Variations of ~0.4 mag are expected in the I-band absolute magnitude of red clump giants, M_I^RC, as a function of both stellar age and metallicity. This regardless of some potential theoretical uncertainties. Due to the quite large…

Astrophysics · Physics 2007-05-23 Leo Girardi

We report the splitting of an oscillating DNA circuit into $\sim 700$ droplets with picoliter volumes. Upon incubation at constant temperature, the droplets display sustained oscillations that can be observed for more than a day.…

Many structures inside the cell such as nucleosomes and protein-mediated DNA loops contain sharply bent double-stranded (ds) DNA. Therefore, the energetics of strong dsDNA bending constitutes an essential part of cellular thermodynamics.…

Biological Physics · Physics 2014-11-05 Tung T. Le , Harold D. Kim

We find that the observed dependencies (scaling) of long-range beam-beam effects on the beam separation and intensity are consistent with the simple assumption that, all other parameters being the same, the quantity preserved during…

Accelerator Physics · Physics 2014-10-23 D. Kaltchev , W. Herr

RNA's diversity of structures and functions impacts all life forms since primordia. We use calorimetric force spectroscopy to investigate RNA folding landscapes in previously unexplored low-temperature conditions. We find that Watson-Crick…

Biomolecules · Quantitative Biology 2024-04-30 Paolo Rissone , Aurelien Severino , Isabel Pastor , Felix Ritort

Plasmids are major players in Horizontal Gene Transfer mechanisms, hence they are highly variable in their gene content and length. We propose a model for the fitness of a plasmid as a function of its length, which predicts diminishing…

Populations and Evolution · Quantitative Biology 2014-11-04 Alice Ledda , Luca Ferretti

The process of polymer condensation, i.e. the formation of bonds between reactive end-groups, is ubiquitous in both industry and biology. Here we study generic systems undergoing polymer condensation in competition with cyclisation. Using a…

Motile bacteria are known to accumulate at surfaces, eventually leading to changes in bacterial motility and bio-film formation. We use a novel two-colour, three-dimensional Lagrangian tracking technique, to follow simultaneously the body…

The structure of polymers at solid interfaces evolves over time, but the corresponding changes in their rheological properties remain poorly understood. Here, using a home-built quartz tuning fork atomic force microscope-based…

Fluid Dynamics · Physics 2025-08-22 Jaewon Shim , Manhee Lee , Wonho Jhe

We study the kinetics of diffusion-limited coalescence, A+A-->A, and annihilation, A+A-->0, in the Bethe lattice of coordination number z. Correlations build up over time so that the probability to find a particle next to another varies…

Statistical Mechanics · Physics 2007-05-23 Daniel ben-Avraham , M. Lawrence Glasser

We present the latest results of a long-term observational project aimed at observing, collecting from the literature, and homogenising the light, colour, and spectral variations of the well-known emission-line Be star V923 Aql. Our…

Solar and Stellar Astrophysics · Physics 2021-03-17 M. Wolf , P. Harmanec , H. Božić , P. Koubský , S. Yang , D. Ruždjak , M. Šlechta , H. Ak , H. Bakış , V. Bakış , A. Oplištilová , K. Vitovský

We investigate the motion of two overlapping polymers with self-avoidance confined in a narrow 2d box. A statistical model is constructed using blob free-energy arguments. We find spontaneous segregation under the condition: $L > R_{//}$,…

Biological Physics · Physics 2012-11-20 Ya Liu , Bulbul Chakraborty

The aim of this paper is to investigate the distribution of a continuous polymer in the presence of an attractive finitely supported potential. The most intricate behavior can be observed if we simultaneously and independently vary two…

Mathematical Physics · Physics 2020-12-04 L. Koralov , S. Molchanov , B. Vainberg

Single T4-DNA molecules were confined in rectangular-shaped channels with a depth of 300 nm and a width in the range 150-300 nm casted in a poly(dimethylsiloxane) nanofluidic chip. The extensions of the DNA molecules were measured with…

Biological Physics · Physics 2009-11-13 Ce Zhang , Fang Zhang , Jeroen A. van Kan , Johan R. C. van der Maarel

The effect of dissociation of the invading electrolyte on the formation of Liesegang bands is investigated. We find, using organic compounds with known dissociation constants, that the spacing coefficient, 1+p, that characterizes the…

Statistical Mechanics · Physics 2016-09-28 B. Chopard , M. Droz , J. Magnin , Z. Rácz , M. Zrinyi

Consider a diffusion process corresponding to the operator $L=\frac12a\frac{d^2}{dx^2}+b\frac d{dx}$ and which is transient to $+\infty$. For $c>0$, we give an explicit criterion in terms of the coefficients $a$ and $b$ which determines…

Probability · Mathematics 2014-02-26 Ross G. Pinsky

Peculiarities of the defect modes of cholesteric liquid crystals (CLCs) with an isotropic/anisotropic defect inside are investigated. The influence of the defect layer thickness and its anisotropy of refraction, the influence of the system…

Polycrystalline solids can exhibit material properties that differ significantly from those of equivalent single-crystal samples, in part, because of a spontaneous redistribution of mobile point defects into so-called space-charge regions…

Consider two independent random strings having same length and taking values uniformly in a common finite alphabet. We study the order of the variance of the length of the longest common subsequences (LCS) of these strings when long blocks,…

Probability · Mathematics 2016-09-26 S. Amsalu , C. Houdré , H. Matzinger