English
Related papers

Related papers: An Algorithm for Missing Value Estimation for DNA …

200 papers

Low-Rank Adaptation (LoRA) enables parameter-efficient fine-tuning of large models by decomposing weight updates into low-rank matrices, significantly reducing storage and computational overhead. While effective, standard LoRA lacks…

Machine Learning · Computer Science 2026-05-11 Viktar Dubovik , Patryk Marszałek , Jacek Tabor , Tomasz Kuśmierczyk

Ultra high-throughput sequencing of transcriptomes (RNA-Seq) has enabled the accurate estimation of gene expression at individual isoform level. However, systematic biases introduced during the sequencing and mapping processes as well as…

Methodology · Statistics 2013-10-02 Hui Jiang , Julia Salzman

Sparse principal component analysis (PCA) is an important technique for dimensionality reduction of high-dimensional data. However, most existing sparse PCA algorithms are based on non-convex optimization, which provide little guarantee on…

Methodology · Statistics 2019-11-20 Yixuan Qiu , Jing Lei , Kathryn Roeder

The rapid growth of Large Language Models has driven demand for effective model compression techniques to reduce memory and computation costs. Low-rank pruning has gained attention for its GPU compatibility across all densities. However,…

Machine Learning · Computer Science 2025-08-14 Jialin Zhao , Yingtao Zhang , Carlo Vittorio Cannistraci

In this paper, we consider the problem of low-rank phase retrieval whose objective is to estimate a complex low-rank matrix from magnitude-only measurements. We propose a hierarchical prior model for low-rank phase retrieval, in which a…

Machine Learning · Statistics 2018-11-06 Kaihui Liu , Jiayi Wang , Zhengli Xing , Linxiao Yang , Jun Fang

Fine-tuning helps large language models (LLM) recover degraded information and enhance task performance. Although Low-Rank Adaptation (LoRA) is widely used and effective for fine-tuning, we have observed that its scaling factor can limit or…

Machine Learning · Computer Science 2025-01-14 Jun Liu , Zhenglun Kong , Peiyan Dong , Changdi Yang , Xuan Shen , Pu Zhao , Hao Tang , Geng Yuan , Wei Niu , Wenbin Zhang , Xue Lin , Dong Huang , Yanzhi Wang

Principal components analysis (PCA) is a widely used dimension reduction technique with an extensive range of applications. In this paper, an online distributed algorithm is proposed for recovering the principal eigenspaces. We further…

Machine Learning · Statistics 2019-05-20 Davoud Ataee Tarzanagh , Mohamad Kazem Shirani Faradonbeh , George Michailidis

This paper proposes scalable and fast algorithms for solving the Robust PCA problem, namely recovering a low-rank matrix with an unknown fraction of its entries being arbitrarily corrupted. This problem arises in many applications, such as…

Optimization and Control · Mathematics 2013-10-21 Zhouchen Lin , Minming Chen , Yi Ma

Low-rank adaptation is a popular parameter-efficient fine-tuning method for large language models. In this paper, we analyze the impact of low-rank updating, as implemented in LoRA. Our findings suggest that the low-rank updating mechanism…

Computation and Language · Computer Science 2024-05-21 Ting Jiang , Shaohan Huang , Shengyue Luo , Zihan Zhang , Haizhen Huang , Furu Wei , Weiwei Deng , Feng Sun , Qi Zhang , Deqing Wang , Fuzhen Zhuang

We consider the problem of handling missing data with deep latent variable models (DLVMs). First, we present a simple technique to train DLVMs when the training set contains missing-at-random data. Our approach, called MIWAE, is based on…

Machine Learning · Statistics 2019-02-05 Pierre-Alexandre Mattei , Jes Frellsen

We provide estimation methods for nonseparable panel models based on low-rank factor structure approximations. The factor structures are estimated by matrix-completion methods to deal with the computational challenges of principal component…

Econometrics · Economics 2021-03-05 Iván Fernández-Val , Hugo Freeman , Martin Weidner

This note studies the worst-case recovery error of low-rank and bisparse matrices as a function of the number of one-bit measurements used to acquire them. First, by way of the concept of consistency width, precise estimates are given on…

Information Theory · Computer Science 2024-12-20 Simon Foucart , Laurent Jacques

One of the most important processing steps in any analysis pipeline is handling missing data. Traditional approaches simply delete any sample or feature with missing elements. Recent imputation methods replace missing data based on assumed…

Databases · Computer Science 2024-05-03 Kenneth Smith , Sharlee Climer

It is well known that correlations in microarray data represent a serious nuisance deteriorating the performance of gene selection procedures. This paper is intended to demonstrate that the correlation structure of microarray data provides…

Applications · Statistics 2007-12-18 Lev Klebanov , Andrei Yakovlev

In portable, 3-D, or ultra-fast ultrasound (US) imaging systems, there is an increasing demand to reconstruct high quality images from limited number of data. However, the existing solutions require either hardware changes or…

Computer Vision and Pattern Recognition · Computer Science 2017-10-31 Yeo Hun Yoon , Jong Chul Ye

Boolean matrix factorization (BMF) is a fundamental tool for analyzing binary data and discovering latent information hidden in the data. Formal Concept Analysis (FCA) provides us with an essential insight into BMF and the design of…

Information Retrieval · Computer Science 2026-03-17 Petr Krajča , Martin Trnecka

Missing data imputation is a fundamental problem in data analysis, and many studies have been conducted to improve its performance by exploring model structures and learning procedures. However, data augmentation, as a simple yet effective…

Machine Learning · Computer Science 2023-04-07 Yufeng Wang , Dan Li , Cong Xu , Min Yang

Matrix completion is a modern missing data problem where both the missing structure and the underlying parameter are high dimensional. Although missing structure is a key component to any missing data problems, existing matrix completion…

Machine Learning · Statistics 2020-03-23 Xiaojun Mao , Raymond K. W. Wong , Song Xi Chen

In many applications that require matrix solutions of minimal rank, the underlying cost function is non-convex leading to an intractable, NP-hard optimization problem. Consequently, the convex nuclear norm is frequently used as a surrogate…

Machine Learning · Computer Science 2014-08-12 David Wipf

In many applications that require matrix solutions of minimal rank, the underlying cost function is non-convex leading to an intractable, NP-hard optimization problem. Consequently, the convex nuclear norm is frequently used as a surrogate…

Machine Learning · Statistics 2012-07-11 David Wipf