Related papers: Vector space of DNA genomic sequences on a Genetic…

A new n-dimensional vector space of the DNA sequences on the Galois field of the 64 codons (GF(64)) is proposed. In this vector space gene mutations can be considered linear transformations or translations of the wild type gene. In…

By starting from the four DNA bases order in the Boolean lattice, a novel Lie Algebra of the genetic code is proposed. Here, the principal partitions of the genetic code table were obtained as equivalent classes of quotient subspaces of the…

The Z_64-algebra of the genetic code and DNA sequences of length N was recently stated. In order to beat the limits of this structure such as the impossibility of non-coding region analysis in genomes and the impossibility of the insertions…

Given a prime power $q$ and a positive integer $r>1$ we say that a cyclic code of length $n$, $C\subseteq F_{q^r}^n$, is Galois supplemented if for any non-trivial element $\sigma$ in the Galois group of the extension $ F_{q^r}/ F_q$,…

A plausible architecture of an ancient genetic code is derived from an extended base triplet vector space over the Galois field of the extended base alphabet {D, G, A, U, C}, where the letter D represents one or more hypothetical bases with…

In this paper, we present a novel design strategy of DNA codes with length $3n$ over the non-chain ring $R=\mathbb{Z}_4+u\mathbb{Z}_4+u^2\mathbb{Z}_4$ with $64$ elements and $u^3=1$, where $n$ denotes the length of a code over $R$. We first…

Let K be a field admitting a cyclic Galois extension of degree n. The main result of this paper is a decomposition theorem for the space of alternating bilinear forms defined on a vector space of odd dimension n over K. We show that this…

We develop a Galois descent approach to finite-field Fourier spectra over an arbitrary finite base field. Let $\mathbb K=\mathbb F_q$ and $\mathbb L=\mathbb F_{q^m}$. If a Fourier transform is applied to a $\mathbb K$-valued vector, then…

We describe Galois connections which arise between two kinds of combinatorial structures, both of which generalize trees with labelled leaves, and then apply those connections to a family of polytopes. The graphs we study can be imbued with…

This paper proposes a new family of recursive systematic convolutional codes, defined in the non-binary domain over different Galois fields GF(q) and intended to be used as component codes for the design of non-binary turbo codes. A general…

Flag codes that are orbits of a cyclic subgroup of the general linear group acting on flags of a vector space over a finite field, are called cyclic orbit flag codes. In this paper we present a new contribution to the study of such codes…

A mathematical algorithm to describe DNA or RNA sequences of $N$ nucleotides by a string of $2N$ integers numbers is presented in the framework of the so called crystal basis model of the genetic code. The description allows to define a not…

In this short note, an example of a semifield of order 128 containing the Galois field $\mathbb{F}_8$ is given. Up to our knowledge, this is the first example supporting the following problem by Cordero and Chen (2013): ``There exist…

The genetic code is the function from the set of codons to the set of amino acids by which a DNA sequence encodes proteins. Since the codons also influence the shape of the DNA molecule itself, the same sequence that encodes a protein also…

Let $d$ and $n$ be positive integers, and $E/F$ be a separable field extension of degree $m=\binom{n+d}{n}$. We show that if $|F| > 2$, then there exists a point $P\in \mathbb{P}^n(E)$ which does not lie on any degree $d$ hypersurface…

Substitution Box or S-Box had been generated using 4-bit Boolean Functions (BFs) for Encryption and Decryption Algorithm of Lucifer and Data Encryption Standard (DES) in late sixties and late seventies respectively. The S-box of Advance…

One way of describing gauge theories in physics is to assign a vector space $V_{x}$ to each space time point $x.$ For each $x$ the field $\psi$ takes values $\psi(x)$ in $V_{x}.$ The freedom to choose a basis in each $V_{x}$ introduces…

Let $\tilde{f}(X)\in\mathbb{Z}[X]$ be a degree-$n$ polynomial such that $f(X):=\tilde{f}(X)\bmod p$ factorizes into $n$ distinct linear factors over $\mathbb{F}_p$. We study the problem of deterministically factoring $f(X)$ over…

The article is devoted to phenomena of symmetries and algebras in matrix presentations of the genetic code. The Kronecker family of the genetic matrices is investigated, which is based on the alphabetical matrix [C A; U G], where C, A, U, G…

For a finite dimensional vector space G we define the k-th generic syzygy scheme Gensyz_k(G) by explicit equations. We show that the syzygy scheme Syz(f) of any syzygy in the linear strand of a projective variety X which is cut out by…