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The Turing pattern model is one type of reaction-diffusion (RD) model. The first identification of pattern formation by the Turing pattern model in an actual animal was made in the 1990s with the observation of patterns in the sea anemone.…

Quantitative Methods · Quantitative Biology 2023-08-15 Takeshi Ishida

Life systems are complex and hierarchical, with diverse components at different scales, yet they sustain themselves, grow, and evolve over time. How can a theory of such complex biological states be developed? Here we note that for a…

Biological Physics · Physics 2024-10-03 Kunihiko Kaneko

We present some results on the proportion of permutations of length $n$ containing certain mesh patterns as $n$ grows large, and give exact enumeration results in some cases. In particular, we focus on mesh patterns where entire rows and…

Combinatorics · Mathematics 2020-11-24 Dejan Govc , Jason P. Smith

In this paper the Turing pattern formation mechanism of a two component reaction-diffusion system modeling the Schnakenberg chemical reaction coupled to linear cross-diffusion terms is studied. The linear cross-diffusion terms favors the…

Pattern Formation and Solitons · Physics 2017-05-08 G. Gambino , S. Lupo , M. Sammartino

The observation that some subgraphs, called motifs, appear more often in real networks than in their randomized counterparts has attracted much attention in the scientific community. In the prevalent approach the detection of motifs is…

Molecular Networks · Quantitative Biology 2014-08-28 Anatol E. Wegner

Important cellular processes, such as cell motility and cell division, are coordinated by cell polarity, which is determined by the non-uniform distribution of certain proteins. Such protein patterns form via an interplay of protein…

Biological Physics · Physics 2020-05-20 Manon C Wigbers , Fridtjof Brauns , Ching Yee Leung , Erwin Frey

Taylor's law (TL), the scaling relationship between the mean and variance, has been observed in various fields. However, the underlying reasons why TL is so widely observed, why the exponents of TL are often close to 2, and the relationship…

Adaptation and Self-Organizing Systems · Physics 2025-04-29 Yuzuru Mitsui , Hiroshi Kori

Commonly recognized evolutionarily relevant effects of sexual reproduction include increased diversity, accelerated adaptation, and constrained accumulation of deleterious mutations, along with a secondary effect of species genotype…

Populations and Evolution · Quantitative Biology 2025-06-17 Assaf Marron , Smadar Szekely , Irun R. Cohen , David Harel

A common trait of complex systems is that they can be represented by means of a network of interacting parts. It is, in fact, the network organisation (more than the parts) what largely conditions most higher-level properties, which are not…

Populations and Evolution · Quantitative Biology 2019-07-15 Ricard Sole , Sergi Valverde

We study Turing pattern formation in a system undergoing radial growth in two dimensions. The Lengyel-Epstein two variable model is implemented in COMSOL Multiphysics and solved on domains growing at different speeds while sweeping other…

Pattern Formation and Solitons · Physics 2019-12-10 Noah H. Somberg , Christopher Konow , Irving R. Epstein , Milos Dolnik

The mechanism by which cells measure the dimension of the organ in which they are embedded, and slow down their growth when the final size is reached, is a long-standing problem of developmental biology. The role of mechanics in this…

Biological Physics · Physics 2023-07-19 Alexander Erlich , Pierre Recho

We typically observe large-scale outcomes that arise from the interactions of many hidden, small-scale processes. Examples include age of disease onset, rates of amino acid substitutions, and composition of ecological communities. The…

Quantitative Methods · Quantitative Biology 2009-07-19 Steven A. Frank

In quantum/wave systems with chaotic classical analogs, wavefunctions evolve in highly complex, yet deterministic ways. A slight perturbation of the system, though, will cause the evolution to diverge from its original behavior increasingly…

Chaotic Dynamics · Physics 2009-11-07 Nicholas R. Cerruti , Steven Tomsovic

It is proposed that the spatial (and temporal) patterns spontaneously appearing in dissipative systems maximize the energy flow through the pattern forming interface. In other words - the patterns maximize the entropy growth rate in an…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kestutis Staliunas

Heterogeneous growth plays an important role in the shape and pattern formation of thin elastic structures ranging from the petals of blooming lilies to the cell walls of growing bacteria. Here we address the stability and regulation of…

Soft Condensed Matter · Physics 2018-06-05 Salem Al Mosleh , Ajay Gopinathan , Christian Santangelo

The theory of growth kinetics developed previously is extended to the asymmetric case of off-critical quenches for systems with a conserved scalar order parameter. In this instance the new parameter $M$, the average global value of the…

Condensed Matter · Physics 2009-10-22 G. F. Mazenko , R. A. Wickham

We consider a system of reaction-diffusion equations including chemotaxis terms and coming out of the modeling of multiple sclerosis. The global existence of strong solutions to this system in any dimension is proved, and it is also shown…

Analysis of PDEs · Mathematics 2020-09-29 Laurent Desvillettes , Valeria Giunta , Jeff Morgan , Bao Quoc Tang

Genetically engineered bacteria to increase the tumbling frequency of the run-and-tumble motion for the higher local bacterial density form visible stripe pattern composed of successive high and low density regions on an agar plate. We…

Cell Behavior · Quantitative Biology 2019-05-13 Xingyu Zhang , Namiko Mitarai

Wavelength selection in reaction--diffusion systems can be understood as a coarsening process that is interrupted by counteracting processes at certain wavelengths. We first show that coarsening in mass-conserving systems is driven by…

Pattern Formation and Solitons · Physics 2021-04-16 Fridtjof Brauns , Henrik Weyer , Jacob Halatek , Junghoon Yoon , Erwin Frey

A tumor can be thought of as an ecosystem, which critically means that we cannot just consider it as a collection of mutated cells but more as a complex system of many interacting cellular and microenvironmental elements. At its simplest, a…

Populations and Evolution · Quantitative Biology 2013-05-03 Jill Gallaher , Alexander R. A. Anderson
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