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Channels are Catalysts for Diffusion and in that sense are Enzymes. This idea is useful for the design and interpretation of experiments.

Biomolecules · Quantitative Biology 2011-12-23 Bob Eisenberg

We study ions in a nanotrap, where the electrodes are nanomechanical resonantors. The ions play the role of a quantum optical system which acts as a probe and control, and allows entanglement with or between nanomechanical resonators.

Quantum Physics · Physics 2011-07-26 L. Tian , P. Zoller

Aquaporins (AQPs) are a family of transmembrane channels that are found from archaea, eubacteria, and fungi kingdoms to plants and animals. These proteins play a major role in water and small solutes transport across biological cell…

It is well known that at the gel-liquid phase transition temperature a lipid bilayer membrane exhibits an increased ion permeability. We analyze the quantized currents in which the increased permeability presents itself. The open time…

Biological Physics · Physics 2010-07-07 Jill Gallaher , Katarzyna Wodzinska , Thomas Heimburg , Martin Bier

Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns…

Soft Condensed Matter · Physics 2025-01-22 Hiroshi Noguchi

Modeling of ion transport via plasma membrane needs identification and quantitative understanding of the involved processes. Brief characterization of main ion transport systems of a yeast cell (Pma1, Ena1, TOK1, Nha1, Trk1, Trk2,…

Subcellular Processes · Quantitative Biology 2016-01-19 Vadim Volkov

The transport and dispersion of multiple species of charged ions are central to many biological and physical processes, including electrokinetic ion separation. However, most theoretical studies of dispersion in channels have focused on…

Soft Condensed Matter · Physics 2026-05-04 Thakurdas Mahata , Anirban Chatterjee , Ameeya Kumar Nayak

We consider two different kinds of fluctuations in an ion trap potential: external fluctuating electrical fields, which cause statistical movement (``wobbling'') of the ion relative to the center of the trap, and fluctuations of the spring…

Quantum Physics · Physics 2009-10-31 S. Schneider , G. J. Milburn

Electron transport characteristics through molecular wires are studied by using the Green's function formalism. Parametric calculations are performed based on the tight-binding model to investigate the transport properties through the…

Mesoscale and Nanoscale Physics · Physics 2009-11-06 Santanu K. Maiti

Many biological systems are appropriately viewed as passive inclusions immersed in an active bath: from proteins on active membranes to microscopic swimmers confined by boundaries. The non-equilibrium forces exerted by the active bath on…

Soft Condensed Matter · Physics 2020-07-06 Alpha A. Lee , Dominic Vella , John S. Wettlaufer

Ionic flow carries electrical signals for cells to communicate with each other. The permanent charge of an ion channel is a crucial protein structure for flow properties while boundary conditions play a role of the driving force. Their…

Numerical Analysis · Mathematics 2021-06-09 Weizhang Huang , Weishi Liu , Yufei Yu

The need for organisms to regulate their volume and osmolarity when surrounded by freshwater is a basic physical challenge for many bacteria, protists and algae. Taking inspiration from the contractile vacuole complex found in many…

Biological Physics · Physics 2024-09-24 Sami C. Al-Izzi , Matthew S. Turner , Pierre Sens

The problem of transport through nanochannels is one of the major questions in cell biology, with a wide range of applications. Brownian ratchets are fundamental in various biochemical processes, and are roughly divided into two categories:…

Soft Condensed Matter · Physics 2013-07-24 Anna Lappala , Alessio Zaccone , Eugene M. Terentjev

The intracellular environment is a dynamic space filled with various organelles moving in all directions. Included in this diverse group of organelles are vesicles, which are involved in transport of molecular cargo throughout the cell.…

Biological Physics · Physics 2018-09-07 Danielle Posey , Paris Blaisdell-Pijuan , Samantha K. Knoll , Taher A. Saif , Wylie W. Ahmed

Experiments measuring currents through single protein channels show unstable currents, a phenomena called the gating of a single channel. Channels switch between an 'open' state with a well defined single amplitude of current and 'closed'…

Biomolecules · Quantitative Biology 2018-05-18 Nir Gavish , Chun Liu , Bob Eisenberg

Travelling waves of neural firing activity are observed in brain tissue as a part of various sensory, motor and cognitive processes. They represent an object of major interest in the study of excitable networks, with analysis conducted in…

Neurons and Cognition · Quantitative Biology 2025-11-10 Henry D. J. Kerr , Peter Ashwin , Kyle C. A. Wedgwood

Chemistry is about chemical reactions. Chemistry is about electrons changing their configurations as atoms and molecules react. Chemistry studies reactions as if they occurred in ideal infinitely dilute solutions. But most reactions occur…

Biomolecules · Quantitative Biology 2013-06-26 Bob Eisenberg

Ionic liquids constrained at interfaces or restricted in subnanometric pores are increasingly employed in modern technologies, including energy applications. Understanding the details of their behavior in these conditions is therefore…

Materials Science · Physics 2018-09-25 Stefano Mossa

Water molecules confined between biological membranes exhibit a distinctive non-Gaussian displacement distribution, far different from bulk water. Here, we introduce a new transport equation for water molecules in the intermembrane space,…

Soft Condensed Matter · Physics 2024-04-19 Minho Lee , Euihyun Lee , Ji-Hyun Kim , Hyonseok Hwang , Minhaeng Cho , Jaeyoung Sung

The ability of semipermeable membranes to selectively impede the transport of undesirable solutes is key to many applications. Yet, obtaining a systematic understanding of how membrane structure affects selectivity remains elusive due to…

Soft Condensed Matter · Physics 2020-01-03 Hessam Malmir , Razi Epsztein , Menachem Elimelech , Amir Haji-Akbari