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Related papers: Evolutionary origin of power-laws in Biochemical R…

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The composition of cellular metabolism is different across species. Empirical data reveal that bacterial species contain similar numbers of metabolic reactions but that the cross-species popularity of reactions is so heterogenous that some…

Populations and Evolution · Quantitative Biology 2024-01-08 Mi Jin Lee , Deok-Sun Lee

The discovery of two fundamental laws concerning cellular dynamics with recursive growth is reported. First, the chemical abundances measured over many cells are found to obey a log-normal distribution and second, the relationship between…

Molecular Networks · Quantitative Biology 2007-05-23 Chikara Furusawa , Takao Suzuki , Akiko Kashiwagi , Tetsuya Yomo , Kunihiko Kaneko

Using data from gene expression databases on various organisms and tissues, including yeast, nematodes, human normal and cancer tissues, and embryonic stem cells, we found that the abundances of expressed genes exhibit a power-law…

Biological Physics · Physics 2009-11-07 Chikara Furusawa , Kunihiko Kaneko

Recently several authors have proposed stochastic evolutionary models for the growth of complex networks that give rise to power-law distributions. These models are based on the notion of preferential attachment leading to the ``rich get…

Physics and Society · Physics 2007-05-23 Trevor Fenner , Mark Levene , George Loizou

Recently several authors have proposed stochastic evolutionary models for the growth of complex networks that give rise to power-law distributions. These models are based on the notion of preferential attachment leading to the ``rich get…

Soft Condensed Matter · Physics 2007-05-23 Trevor Fenner , Mark Levene , George Loizou

Research in quantitative evolutionary genomics and systems biology led to the discovery of several universal regularities connecting genomic and molecular phenomic variables. These universals include the log-normal distribution of the…

Populations and Evolution · Quantitative Biology 2015-05-30 Eugene V. Koonin

For taxonomic levels higher than species, the abundance distributions of number of subtaxa per taxon tend to approximate power laws, but often show strong deviationns from such a law. Previously, these deviations were attributed to…

Biological Physics · Physics 2009-11-06 Johan Chu , Chris Adami

The degree distribution of many biological and technological networks has been described as a power-law distribution. While the degree distribution does not capture all aspects of a network, it has often been suggested that its functional…

Molecular Networks · Quantitative Biology 2007-05-23 Michael P. H. Stumpf , Piers J. Ingram

Current-day genomes bear the mark of the evolutionary processes. One of the strongest indications is the sequence homology among families of proteins that perform similar biological functions in different species. The number of proteins in…

Biological Physics · Physics 2007-05-23 Joel S. Bader

We propose a principle of consistency between different hierarchical levels of biological systems. Given a consistency between molecule replication and cell reproduction, universal statistical laws on cellular chemical abundances are…

Cell Behavior · Quantitative Biology 2008-07-21 Kunihiko Kaneko , Chikara Furusawa

Zipf's power-law distribution is a generic empirical statistical regularity found in many complex systems. However, rather than universality with a single power-law exponent (equal to 1 for Zipf's law), there are many reported deviations…

Physics and Society · Physics 2015-03-18 Ryohei Hisano , Didier Sornette , Takayuki Mizuno

In living cells, chemical reactions are connected by sharing their products and substrates, and form complex networks, e.g. metabolic pathways. Here we developed a theory to predict the sensitivity, i.e. the responses of concentrations and…

Molecular Networks · Quantitative Biology 2016-08-24 Takashi Okada , Atsushi Mochizuki

The origin of power-law distributions in self-organized criticality is investigated by treating the variation of the number of active sites in the system as a stochastic process. An avalanche is then regarded as a first-return random walk…

Statistical Mechanics · Physics 2009-11-10 C. B. Yang

In this paper we study the macroscopic conduction properties of large but finite binary networks with conducting bonds. By taking a combination of a spectral and an averaging based approach we derive asymptotic formulae for the conduction…

Disordered Systems and Neural Networks · Physics 2015-06-04 D. P. Almond , C. J. Budd , M. A. Freitag , G. W. Hunt , N. J. McCullen , N. D. Smith

We investigate the distribution of flavonoids, a major category of plant secondary metabolites, across species. Flavonoids are known to show high species specificity, and were once considered as chemical markers for understanding adaptive…

Molecular Networks · Quantitative Biology 2009-04-23 Kazuhiro Takemoto , Masanori Arita

Recently several authors have proposed stochastic models of the growth of the Web graph that give rise to power-law distributions. These models are based on the notion of preferential attachment leading to the ``rich get richer''…

Disordered Systems and Neural Networks · Physics 2007-05-23 Mark Levene , Trevor Fenner , George Loizou , Richard Wheeldon

Are biological networks different from other large complex networks? Both large biological and non-biological networks exhibit power-law graphs (number of nodes with degree k, N(k) ~ k-b) yet the exponents, b, fall into different ranges.…

Condensed Matter · Physics 2007-05-23 Fan Chung , Linyuan Lu , T. Gregory Dewey , David J. Galas

Recently several authors have proposed stochastic evolutionary models for the growth of the web graph and other networks that give rise to power-law distributions. These models are based on the notion of preferential attachment leading to…

Soft Condensed Matter · Physics 2007-05-23 Trevor Fenner , Mark Levene , George Loizou

Several populational networks present complex topologies when implemented in evolutionary algorithms. A common feature of these topologies is the emergence of a power law. Power law behavior with different scaling factors can also be…

Computation · Statistics 2022-03-08 Francisco Leonardo Bezerra Martins , José Cláudio do Nascimento

Selected examples of possible origins of power-law distributions are presented.

Statistical Mechanics · Physics 2015-04-02 Grzegorz Wilk , Zbigniew Włodarczyk
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