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The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

Populations and Evolution · Quantitative Biology 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

We construct a model of speciation from evolution in an ecosystem consisting of a limited amount of energy recources. The species posses genetic information, which is inherited according to the rules of the Penna model of genetic evolution.…

Soft Condensed Matter · Physics 2007-05-23 Aleksandra Nowicka , Artur Duda , Miroslaw R. Dudek

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

Populations and Evolution · Quantitative Biology 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

We have simulated the evolution of age structured populations whose individuals represented by their diploid genomes were distributed on a square lattice. The environmental conditions on the whole territory changed simultaneously in the…

Populations and Evolution · Quantitative Biology 2009-11-05 Wojciech Waga , Marta Zawierta , Stanislaw Cebrat

The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of…

Populations and Evolution · Quantitative Biology 2015-05-19 D. Stauffer , S. Cebrat , T. J. P. Penna , A. O. Sousa

Competition between species and genotypes is a dominant factor in a variety of ecological and evolutionary processes. Biological dynamics are typically highly stochastic, and therefore, analyzing a competitive system requires accounting for…

Populations and Evolution · Quantitative Biology 2025-01-09 Ori Turkia , Nadav M. Shnerb

We are interested in modeling some two-level population dynamics, resulting from the interplay of ecological interactions and phenotypic variation of individuals (or hosts) and the evolution of cells (or parasites) of two types living in…

Probability · Mathematics 2011-01-21 Sylvie Méléard , Sylvie Roelly

Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

Classical models for competition between two species usually predict exclusion or divergent evolution of resource exploitation. However, recent experimental data show that coexistence is possible for very similar species competing for the…

Populations and Evolution · Quantitative Biology 2009-11-13 I. C. Charret , J. N. C. Louzada , A. T. Costa

We compare and contrast the long-time dynamical properties of two individual-based models of biological coevolution. Selection occurs via multispecies, stochastic population dynamics with reproduction probabilities that depend nonlinearly…

Populations and Evolution · Quantitative Biology 2011-11-10 Per Arne Rikvold

Parapatric speciation is studied using an individual--based model with sexual reproduction. We combine the theory of mutation accumulation for biological ageing with an environmental selection pressure that varies according to the…

Populations and Evolution · Quantitative Biology 2009-11-11 V. Schwammle , A. O. Sousa , S. M. de Oliveira

In this paper the Penna model is reconsidered. With computer simulations we check how the control parameters of the model influence the size of the stable population.

Populations and Evolution · Quantitative Biology 2007-05-23 K. Malarz , M. Sitarz , P. Gronek , A. Dydejczyk

We introduce into the Penna Model for biological ageing one of the possible male mechanisms used to maximize the ability of their sperm to compete with sperm from other males. Such a selfish mechanism increases the male reproduction success…

Condensed Matter · Physics 2009-11-07 P. M. C de Oliveira , S. Moss de Oliveira

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

Populations and Evolution · Quantitative Biology 2007-05-23 Miroslaw R. Dudek

We removed from the Penna model for biological ageing any random killing Verhulst factor. Deaths are due only to genetic diseases and the population size is fixed, instead of fluctuating around some constant value. We show that these…

Statistical Mechanics · Physics 2007-05-23 S. Moss de Oliveira , P. M. C de Oliveira , J. S. Sa Martins

Recently, individual-based models originally used for biological purposes revealed interesting insights into processes of the competition of languages. Within this new field of population dynamics a model considering sexual populations with…

Physics and Society · Physics 2015-06-26 Veit Schwämmle

A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and…

Statistical Mechanics · Physics 2007-05-23 Zhi-Feng Huang , Dietrich Stauffer

Can unicellular organisms survive a drastic temperature change, and adapt to it after many generations? In simulations of the Penna model of biological ageing, both extinction and adaptation were found for asexual and sexual reproduction as…

Populations and Evolution · Quantitative Biology 2007-05-23 D. Stauffer , H. Arndt

The properties of competition models where all individuals are identical are relatively well-understood; however, juveniles and adults can experience or generate competition differently. We study here less well-known structured competition…

Populations and Evolution · Quantitative Biology 2023-03-22 Gaël Bardon , Frédéric Barraquand

In this study, we construct an evolutionary model of a population of DNA sequences interacting with the surrounding environment on the topological monoid A* of strings on the alphabet A = { a, c, g, t }. A partial differential equation…

Populations and Evolution · Quantitative Biology 2017-06-06 Hitoshi Koyano , Kouji Yano