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In wild-type mice axons of retinal ganglion cells establish topographically precise projection to the superior colliculus of the midbrain. This implies that axons of neighboring retinal ganglion cells project to the proximal locations in…

Neurons and Cognition · Quantitative Biology 2008-02-14 Dmitry Tsigankov , Alexei Koulakov

We present a theoretical model for retinocollicular map development, which can account for intriguing behaviors observed in gain-of-function experiments in knock-in mice by Brown et al., including bifurcation in heterozygous Isl2/EphA3…

Biological Physics · Physics 2007-05-23 Alexei A. Koulakov , Dmitry N. Tsigankov

Molecular and activity-based cues acting together are thought to guide retinal axons to their terminal sites in vertebrate optic tectum or superior colliculus to form an ordered map of connections. The details of mechanisms involved, and…

Neurons and Cognition · Quantitative Biology 2014-08-27 J. J. Johannes Hjorth , David C. Sterratt , Catherine S. Cutts , David J. Willshaw , Stephen J. Eglen

In the mammalian brain, many neuronal ensembles are involved in representing spatial structure of the environment. In particular, there exist cells that encode the animal's location and cells that encode head direction. A number of studies…

Neurons and Cognition · Quantitative Biology 2021-08-10 Y. Dabaghian

This work presents a procedure to extract morphological information from neuronal cells based on the variation of shape functionals as the cell geometry undergoes a dilation through a wide interval of spatial scales. The targeted shapes are…

Diffusion magnetic resonance imaging offers unique in vivo sensitivity to tissue microstructure in brain white matter, which undergoes significant changes during development and is compromised in virtually every neurological disorder. Yet,…

For systems described by finite matrices, an affine form is developed for the maps that describe evolution of density matrices for a quantum system that interacts with another. This is established directly from the Heisenberg picture. It…

Quantum Physics · Physics 2009-11-11 Thomas F. Jordan , Anil Shaji , E. C. G. Sudarshan

Amorphous interfacial complexions have been shown to restrict grain growth and improve damage tolerance in nanocrystalline alloys, with increased chemical complexity stabilizing the complexions themselves. Here, we investigate local…

Materials Science · Physics 2026-03-05 Esther C. Hessong , Zhengyu Zhang , Tianjiao Lei , Mingjie Xu , Toshihiro Aoki , Timothy J. Rupert

Non-coding RNA molecules fold into precise base pairing patterns to carry out critical roles in genetic regulation and protein synthesis. We show here that coupling systematic mutagenesis with high-throughput SHAPE chemical mapping enables…

Quantitative Methods · Quantitative Biology 2011-04-07 Wipapat Kladwang , Christopher C. VanLang , Pablo Cordero , Rhiju Das

Topographic maps are a brain structure connecting pre-synpatic and post-synaptic brain regions. Topographic development is dependent on Hebbian-based plasticity mechanisms working in conjunction with spontaneous patterns of neural activity…

Neurons and Cognition · Quantitative Biology 2025-01-15 Nicholas Gale , Jennifer Rodger , Michael Small , Stephen Eglen

High-dimensional neural activity often reside in a low-dimensional subspace, referred to as neural manifolds. Grid cells in the medial entorhinal cortex provide a periodic spatial code that are organized near a toroidal manifold,…

Neurons and Cognition · Quantitative Biology 2025-10-22 Yuxing Jared Yao , Iris H. R. Yoon

Collagen is the most abundant structural protein in animals, forming hierarchically organised fibrils that provide mechanical support to tissues. Despite detailed structural studies, the physical principles that govern the formation of the…

Soft Condensed Matter · Physics 2025-05-01 Art'om Zolotarjov , Roland Kröger , Dmitri O. Pushkin

Unlike other tissue types, like epithelial tissue, which consist of cells with a much more homogeneous structure and function, the nervous tissue spans in a complex multilayer environment whose topographical features display a large…

Biological Physics · Physics 2017-05-12 C. Simitzi , A. Ranella , E. Stratakis

Topological magnetic structures, such as Hopfions, are central to three-dimensional magnetism, but their characterization in complex geometries remains challenging. We introduce a robust finite-element method for calculating the Hopf index…

Mesoscale and Nanoscale Physics · Physics 2025-05-13 Louis Gallard , Riccardo Hertel

The light-dependent magnetic compass of night-migratory songbirds is widely hypothesized to rely on the radical pair mechanism within retinal cryptochrome. However, bridging the mechanistic gap between microsecond quantum spin dynamics and…

The spiking activity of principal cells in mammalian hippocampus encodes an internalized neuronal representation of the ambient space---a cognitive map. Once learned, such a map enables the animal to navigate a given environment for a long…

Neurons and Cognition · Quantitative Biology 2017-10-10 Andrey Babichev , Dmitriy Morozov , Yuri Dabaghian

For quantum systems described by finite matrices, linear and affine maps of matrices are shown to provide equivalent descriptions of evolution of density matrices for a subsystem caused by unitary Hamiltonian evolution in a larger system;…

Quantum Physics · Physics 2009-11-10 Thomas F. Jordan

We have developed an extended distance matrix approach to study the molecular geometric configuration through spectral decomposition. It is shown that the positions of all atoms in the eigen-space can be specified precisely by their…

Materials Science · Physics 2017-05-24 Xiao-Tian Li , Xiao-bao Yang , Yu-Jun Zhao

Neurons transmit active potentials through axons, which are essential for the brain to function. In this study, the axonal networks of the murine brain were visualized with X-ray tomographic microscopy, also known as X-ray microtomography…

Widefield microscopy is widely used for non-invasive imaging of biological structures at subcellular resolution. When applied to complex specimen, its image quality is degraded by sample-induced optical aberration. Adaptive optics can…

Image and Video Processing · Electrical Eng. & Systems 2025-03-11 Iksung Kang , Qinrong Zhang , Stella X. Yu , Na Ji
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