Related papers: Off-lattice simulation of the solid phase DNA ampl…
Enzymatic ligation is essential for the synthesis of long DNA. However, the number of ligated products exponentially decays as the DNA synthesis proceeds in a random manner. The controlling of ligation randomness is of importance to…
We simulate the motion of spherical particles in a phase-separating binary mixture. By combining cell dynamical equations with Langevin dynamics for particles, we show that the addition of hard particles significantly changes both the speed…
Motivated by the large strain shear of loose granular materials we introduced a model which consists of consecutive optimization and restructuring steps leading to a self organization of a density field. The extensive connections to other…
This work presents a detailed characterisation of the MAST Scrape Off Layer in L-mode. Scans in line averaged density, plasma current and toroidal magnetic field were performed. A comprehensive and integrated study of the SOL was allowed by…
We perform a study of matrix elements relevant for the Delta I=1/2 rule and the direct CP-violation parameter epsilon-prime from first principles by computer simulation in Lattice QCD. We use staggered (Kogut-Susskind) fermions, and employ…
In this work, we discuss the emergence of $p$-wave superfluids of identical fermions in 2D lattices. The optical lattice potential manifests itself in an interplay between an increase in the density of states on the Fermi surface and the…
Several models based on the diffusion-limited aggregation (DLA) model were proposed and their scaling properties explored by computational and theoretical approaches. In this paper, we consider a new extension of the on-lattice DLA model in…
We perform light-scattering numerical simulations for two dust populations: (i) consolidated porous particles computed with the discrete dipole approximation (ADDA) and (ii) highly porous aggregate models, including fractal and hierarchical…
In neural Information Retrieval, ongoing research is directed towards improving the first retriever in ranking pipelines. Learning dense embeddings to conduct retrieval using efficient approximate nearest neighbors methods has proven to…
We present relaxation and preconditioning techniques which accelerate the inversion of the overlap operator by a factor of four on small lattices, with larger gains as the lattice size increases. These improvements can be used in both…
Steady-state plasmonic lasing is studied theoretically for a system consisting of many dye molecules arranged regularly around a gold nano-sphere. A three-level model with realistic molecular dissipation is employed to analyze the…
Data augmentation is widely used for machine learning; however, an effective method to apply data augmentation has not been established even though it includes several factors that should be tuned carefully. One such factor is sample…
Recent in vitro experiments have shown that DNA ejection from bacteriophage can be partially stopped by surrounding osmotic pressure when ejected DNA is digested by DNase I on the course of ejection. We argue in this work by combination of…
The concept of spaser, as the coherent near-field generator, based on nanometric plasmonic resonators, has been successfully demonstrated in number of experiments. Here we have developed the theoretical framework for description of the…
The pattern of calculation of amplitudes of a series of processes in the field of an intensive laser wave, in which two fermions $(p; p')$ and two real photons $(k_1; k_2)$ participate, is considered. In relation to one-photon processes,…
Simultaneous analysis of gene expression data and genetic variants is highly of interest, especially when the number of gene expressions and genetic variants are both greater than the sample size. Association of both causal genes and…
In the sparse normal means model, coverage of adaptive Bayesian posterior credible sets associated to spike and slab prior distributions is considered. The key sparsity hyperparameter is calibrated via marginal maximum likelihood empirical…
We study the effects of the shear force on the rupture mechanism on a double stranded DNA. Motivated by recent experiments, we perform the atomistic simulations with explicit solvent to obtain the distributions of extension in hydrogen and…
We study the real-time dynamics of fermions coupled to scalar fields in a linear sigma model, which is often employed in the context of preheating after inflation or as a low-energy effective model for quantum chromodynamics. We find a…
Saturation effects affecting absorption and fluorescence spectra of an atomic vapor confined in an Extremely Thin Cell (cell thickness $L < 1 \mu m$) are investigated experimentally and theoretically. The study is performed on the $D_{2}$…