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200 papers

Trajectory prediction is a critical functionality of autonomous systems that share environments with uncontrolled agents, one prominent example being self-driving vehicles. Currently, most prediction methods do not enforce scene…

Artificial Intelligence · Computer Science 2022-06-28 Yuxiao Chen , Boris Ivanovic , Marco Pavone

Deep learning has deeply influenced protein science, enabling breakthroughs in predicting protein properties, higher-order structures, and molecular interactions. This paper introduces DeepProtein, a comprehensive and user-friendly deep…

Machine Learning · Computer Science 2025-06-17 Jiaqing Xie , Tianfan Fu

Comparative evaluation of several systems is a recurrent task in researching. It is a key step before deciding which system to use for our work, or, once our research has been conducted, to demonstrate the potential of the resulting model.…

Computation and Language · Computer Science 2026-02-24 Sergio Gómez González , Miguel Domingo , Francisco Casacuberta

Predicting the activities of compounds against protein-based or phenotypic assays using only a few known compounds and their activities is a common task in target-free drug discovery. Existing few-shot learning approaches are limited to…

Machine Learning · Computer Science 2023-11-29 Peter Eckmann , Jake Anderson , Michael K. Gilson , Rose Yu

Diabetes is a major health problem in both developing and developed countries and its incidence is rising dramatically. In this study, we investigate a novel automatic approach to diagnose Diabetes disease based on Feature Weighted Support…

Machine Learning · Computer Science 2012-01-12 Davar Giveki , Hamid Salimi , GholamReza Bahmanyar , Younes Khademian

A fundamental problem in computational chemistry is to find a set of reactants to synthesize a target molecule, a.k.a. retrosynthesis prediction. Existing state-of-the-art methods rely on matching the target molecule with a large set of…

Machine Learning · Computer Science 2021-08-23 Chence Shi , Minkai Xu , Hongyu Guo , Ming Zhang , Jian Tang

Research in bioinformatics is a complex phenomenon as it overlaps two knowledge domains, namely, biological and computer sciences. This paper has tried to introduce an efficient data mining approach for classifying proteins into some useful…

Computational Engineering, Finance, and Science · Computer Science 2011-11-11 Muhammad Mahbubur Rahman , Arif Ul Alam , Abdullah-Al-Mamun , Tamnun E Mursalin

This paper offers a survey of uppaalsmc, a major extension of the real-time verification tool uppaal. uppaalsmc allows for the efficient analysis of performance properties of networks of priced timed automata under a natural stochastic…

Logic in Computer Science · Computer Science 2012-07-06 Peter Bulychev , Alexandre David , Kim Gulstrand Larsen , Marius Mikučionis , Danny Bøgsted Poulsen , Axel Legay , Zheng Wang

In this paper a deterministic preprocessing algorithm is presented, whose output can be given as input to most state-of-the-art epipolar geometry estimation algorithms, improving their results considerably. They are now able to succeed on…

Computer Vision and Pattern Recognition · Computer Science 2015-01-28 Maria Kushnir , Ilan Shimshoni

Molecular simulation is a scientific tool dealing with challenges in material science and biology. This is reflected in a permanent development and enhancement of algorithms within scientific simulation packages. Here, we present…

Pedestrian detection benefits from deep learning technology and gains rapid development in recent years. Most of detectors follow general object detection frame, i.e. default boxes and two-stage process. Recently, anchor-free and one-stage…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Wenhao Wang , Jusheng Zhang

This manuscript describes the software package SCOUT, which analyzes, characterizes, and corrects one-dimensional signals. Specifically, it allows to check and correct for stationarity, detect spurious samples, check for normality, check…

Data Analysis, Statistics and Probability · Physics 2019-11-07 Richard Semaan , Vikas Yadav

End-to-end scene text spotting has made significant progress due to its intrinsic synergy between text detection and recognition. Previous methods commonly regard manual annotations such as horizontal rectangles, rotated rectangles,…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Yuliang Liu , Jiaxin Zhang , Dezhi Peng , Mingxin Huang , Xinyu Wang , Jingqun Tang , Can Huang , Dahua Lin , Chunhua Shen , Xiang Bai , Lianwen Jin

Fast and accurate crystal structure prediction (CSP) algorithms and web servers are highly desirable for exploring and discovering new materials out of the infinite design space. However, currently, the computationally expensive first…

Correspondence-based statistical shape modeling (SSM) stands as a powerful technology for morphometric analysis in clinical research. SSM facilitates population-level characterization and quantification of anatomical shapes such as bones…

Computer Vision and Pattern Recognition · Computer Science 2024-05-17 Jadie Adams , Shireen Elhabian

A personalized model for scanpath prediction provides insights into the visual preferences and attention patterns of individual subjects. However, existing methods for training scanpath prediction models are data-intensive and cannot be…

Computer Vision and Pattern Recognition · Computer Science 2025-04-09 Ruoyu Xue , Jingyi Xu , Sounak Mondal , Hieu Le , Gregory Zelinsky , Minh Hoai , Dimitris Samaras

Protein-peptide molecular docking is a difficult modeling problem. It is even more challenging when significant conformational changes that may occur during the binding process need to be predicted. In this chapter, we demonstrate the…

Biomolecules · Quantitative Biology 2017-01-03 Maciej Pawel Ciemny , Mateusz Kurcinski , Konrad Jakub Kozak , Andrzej Kolinski , Sebastian Kmiecik

Crystal structure prediction (CSP) is now increasingly used in the discovery of novel materials with applications in diverse industries. However, despite decades of developments, the problem is far from being solved. With the progress of…

Materials Science · Physics 2023-07-13 Lai Wei , Qin Li , Sadman Sadeed Omee , Jianjun Hu

To quantify spatial protein-protein proximity (colocalization) in fluorescence microscopic images, cross-correlation and autocorrelation functions were decomposed into fast and slowly decaying components. The fast component results from…

Biological Physics · Physics 2009-11-13 Yong Wu , Mansoureh Eghbali , Jimmy Ou , Min Li , Ligia Toro , Enrico Stefani

Today's routing protocols critically rely on the assumption that the underlying hardware is trusted. Given the increasing number of attacks on network devices, and recent reports on hardware backdoors this assumption has become…

Networking and Internet Architecture · Computer Science 2017-05-02 Kashyap Thimmaraju , Liron Schiff , Stefan Schmid