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A reaction network is a chemical system involving multiple reactions and chemical species. Stochastic models of such networks treat the system as a continuous time Markov chain on the number of molecules of each species with reactions as…

Probability · Mathematics 2007-05-23 Karen Ball , Thomas G. Kurtz , Lea Popovic , Greg Rempala

We study the family of network models derived by requiring the expected properties of a graph ensemble to match a given set of measurements of a real-world network, while maximizing the entropy of the ensemble. Models of this type play the…

Statistical Mechanics · Physics 2009-11-10 Juyong Park , M. E. J. Newman

A method for authorship attribution based on function word adjacency networks (WANs) is introduced. Function words are parts of speech that express grammatical relationships between other words but do not carry lexical meaning on their own.…

Computation and Language · Computer Science 2015-10-28 Santiago Segarra , Mark Eisen , Alejandro Ribeiro

We study the self-organization of the consonant inventories through a complex network approach. We observe that the distribution of occurrence as well as cooccurrence of the consonants across languages follow a power-law behavior. The…

Physics and Society · Physics 2008-06-21 Animesh Mukherjee , Monojit Choudhury , Anupam Basu , Niloy Ganguly

Node counting on a graph is subject to some fundamental theoretical limitations, yet a solution to such problems is necessary in many applications of graph theory to real-world systems, such as collective robotics and distributed sensor…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-29 Arindam Saha , James A. R. Marshall , Andreagiovanni Reina

We construct a minimal content-based realization of the duplication and divergence model of genomic networks introduced by Wagner [A. Wagner, Proc. Natl. Acad. Sci. {\bf 91}, 4387 (1994)] and investigate the scaling properties of the…

Molecular Networks · Quantitative Biology 2009-11-11 Yasemin Sengun , Ayse Erzan

Many real-world networks known as attributed networks contain two types of information: topology information and node attributes. It is a challenging task on how to use these two types of information to explore structural regularities. In…

Physics and Society · Physics 2019-01-28 Zhenhai Chang , Caiyan Jia , Xianjun Yin , Yimei Zheng

We analyze the fine-grained connections between the average degree and the power-law degree distribution exponent in growing information networks. Our starting observation is a power-law degree distribution with a decreasing exponent and…

Social and Information Networks · Computer Science 2017-01-03 Róbert Pálovics , András A. Benczúr

We consider words as a network of interacting letters, and approximate the probability distribution of states taken on by this network. Despite the intuition that the rules of English spelling are highly combinatorial (and arbitrary), we…

Neurons and Cognition · Quantitative Biology 2025-02-13 Greg J. Stephens , William Bialek

We discuss two sampling schemes for selecting random subnets from a network: Random sampling and connectivity dependent sampling, and investigate how the degree distribution of a node in the network is affected by the two types of sampling.…

Statistical Mechanics · Physics 2009-11-11 Michael P. H. Stumpf , Carsten Wiuf

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa

This paper provides time-dependent expressions for the expected degree distribution of a given network that is subject to growth, as a function of time. We consider both uniform attachment, where incoming nodes form links to existing nodes…

Statistical Mechanics · Physics 2013-12-16 Babak Fotouhi , Michael G. Rabbat

We consider a decentralized stochastic learning problem where data points are distributed among computing nodes communicating over a directed graph. As the model size gets large, decentralized learning faces a major bottleneck that is the…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-23 Hossein Taheri , Aryan Mokhtari , Hamed Hassani , Ramtin Pedarsani

Network growth is currently explained through mechanisms that rely on node prestige measures, such as degree or fitness. In many real networks those who create and connect nodes do not know the prestige values of existing nodes, but only…

Disordered Systems and Neural Networks · Physics 2007-05-23 Santo Fortunato , Alessandro Flammini , Filippo Menczer

This paper addresses the problem of distributed learning of average belief with sequential observations, in which a network of $n>1$ agents aim to reach a consensus on the average value of their beliefs, by exchanging information only with…

Multiagent Systems · Computer Science 2018-11-20 Kaiqing Zhang , Yang Liu , Ji Liu , Mingyan Liu , Tamer Başar

Recurrence networks are a novel tool of nonlinear time series analysis allowing the characterisation of higher-order geometric properties of complex dynamical systems based on recurrences in phase space, which are a fundamental concept in…

Chaotic Dynamics · Physics 2016-04-07 Y. Zou , J. Heitzig , R. V. Donner , J. F. Donges , J. D. Farmer , R. Meucci , S. Euzzor , N. Marwan , J. Kurths

In a model of network communication based on a random walk in an undirected graph, what subset of nodes (subject to constraints on the set size), enable the fastest spread of information? The dynamics of spread is described by a process…

Discrete Mathematics · Computer Science 2016-02-23 Fern Y. Hunt

Not all nodes in a network are created equal. Differences and similarities exist at both individual node and group levels. Disentangling single node from group properties is crucial for network modeling and structural inference. Based on…

Statistical Mechanics · Physics 2015-05-20 Joerg Reichardt , Roberto Alamino , David Saad

Sentence matching is a fundamental task of natural language processing with various applications. Most recent approaches adopt attention-based neural models to build word- or phrase-level alignment between two sentences. However, these…

Computation and Language · Computer Science 2021-10-22 Peng Cui , Le Hu , Yuanchao Liu

Regulatory networks describe the interactions between molecular or cellular regulators, like transcription factors and genes in gene regulatory networks, kinases and their receptors in signalling networks, or neurons in neural networks. A…

Molecular Networks · Quantitative Biology 2022-12-29 Niklas Bonacker , Johannes Berg
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