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Related papers: Sympatric speciation in an age-structured populati…

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We have simulated the evolution of age structured populations whose individuals represented by their diploid genomes were distributed on a square lattice. The environmental conditions on the whole territory changed simultaneously in the…

Populations and Evolution · Quantitative Biology 2009-11-05 Wojciech Waga , Marta Zawierta , Stanislaw Cebrat

We use a simple model for biological ageing to study the mortality of the population, obtaining a good agreement with the Gompertz law. We also simulate the same model on a square lattice, considering different strategies of parental care.…

Statistical Mechanics · Physics 2009-11-07 A. O. Sousa , S. Moss de Oliveira , D. Stauffer

We perform simulations based on the Penna model for biological ageing, now with the purpose of studying sympatric speciation, that is, the division of a single species into two or more populations, reproductively isolated, but without any…

Populations and Evolution · Quantitative Biology 2007-05-23 K. Luz-Burgoa

We introduce a square lattice into the Penna bit-string model for biological ageing and study the evolution of the spatial distribution of the population considering different strategies of child-care. Two of the strategies are related to…

Statistical Mechanics · Physics 2007-05-23 A. O. Sousa , S. Moss de Oliveira

Observations of the evolution of species groups in nature, such as well recognized Galapagos finches, have motivated much theoretical research aimed at understanding the processes associated with such radiations. The Penna model is one such…

Populations and Evolution · Quantitative Biology 2007-05-23 K. Luz-Burgoa , Tony Dell , Toshinori Okuyama

A novel mechanism for sympatric speciation that takes into account complex bio-processes within each individual organism is proposed. According to dynamical systems theory, organisms with identical genotypes can possess differentiated…

Condensed Matter · Physics 2007-05-23 Kunihiko Kaneko , Tetsuya Yomo

The Penna model is a model of evolutionary ageing through mutation accumulation where traditionally time and the age of an organism are treated as discrete variables and an organism's genome by a binary bit string. We reformulate the…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao

We introduce a multi-locus genetically acquired phenotype, submitted to mutations and with selective value, in an age-structured model for biological aging. This phenotype describes a single-trait effect of the environment on an individual,…

Statistical Mechanics · Physics 2009-10-31 J. S. Sa' Martins , S. Moss de Oliveira , G. A. de Medeiros

The Penna model is a strategy to simulate the genetic dynamics of age-structured populations, in which the individuals genomes are represented by bit-strings. It provides a simple metaphor for the evolutionary process in terms of the…

Populations and Evolution · Quantitative Biology 2009-11-11 Veit Schwämmle , Suzana M. de Oliveira

A mechanism of sympatric speciation is presented based on the interaction-induced developmental plasticity of phenotypes. First, phenotypes of individuals with identical genotypes split into a few groups, according to instability in the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kunihiko Kaneko

We study the two-species symbiotic contact process (2SCP), recently proposed in [de Oliveira, Santos and Dickman, Phys. Rev. E {\bf 86}, 011121 (2012)] . In this model, each site of a lattice may be vacant or host single individuals of…

Populations and Evolution · Quantitative Biology 2015-06-22 Marcelo M. de Oliveira , Ronald Dickman

We present some analytic results for the steady states of the Penna model of sen escence, generalised to allow genetically identical individuals to die at differ ent ages via an arbitrary survival function. Modelling this with a Fermi…

Soft Condensed Matter · Physics 2009-11-07 J. B. Coe , Y. Mao , M. E. Cates

A microscopic agent dynamical model for diploid age-structured populations is used to study evolution of polymorphism and sympatric speciation. The underlying ecology is represented by a unimodal distribution of resources of some width.…

Populations and Evolution · Quantitative Biology 2015-06-26 E. Brigatti , J. S. Sa' Martins , I. Roditi

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

Genomics · Quantitative Biology 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

Using as a narrative theme the example of Darwin's finches, a microscopic agent-based model is introduces to study sympatric speciation as a result of competition for resources in the same ecological niche. Varying competition among…

Populations and Evolution · Quantitative Biology 2025-11-13 Franco Bagnoli , Tommaso Matteuzzi

The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this…

Populations and Evolution · Quantitative Biology 2009-11-13 K. Bonkowska , M. Kula , S. Cebrat , D. Stauffer

The bit-string Penna Model is used to simulate the competition between an asexual parthenogenetic and a sexual population sharing the same environment. A new-born of either population can mutate and become a part of the other with some…

Statistical Mechanics · Physics 2009-10-31 J. S. Sa' Martins

A stochastic genetic model for biological aging is introduced bridging the gap between the bit-string Penna model and the Pletcher-Neuhauser approach. The phenomenon of exponentially increasing mortality function at intermediate ages and…

Statistical Mechanics · Physics 2007-05-23 Zhi-Feng Huang , Dietrich Stauffer

The standard Penna ageing model with sexual reproduction is enlarged by adding additional bit-strings for love: Marriage happens only if the male love strings are sufficiently different from the female ones. We simulate at what level of…

Populations and Evolution · Quantitative Biology 2015-05-19 D. Stauffer , S. Cebrat , T. J. P. Penna , A. O. Sousa

We generalize the standard Penna bit-string model of biological ageing by assuming that each deleterious mutation diminishes the survival probability in every time interval by a small percentage. This effect is added to the usual lethal but…

Statistical Mechanics · Physics 2015-06-24 J. S. Sá Martins , D. Stauffer
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