Related papers: Graphic requirements for multistationarity
In 1984, Fan gave a sufficient condition involving maximum degree of every pair of vertices at distance two for a graph to be Hamiltonian. Motivated by Fan's result, we say that an induced subgraph $H$ of a graph $G$ is $f$-heavy if for…
This work concerns results on conditions guaranteeing that certain banded $M$-matrices have banded inverses. As a first goal, a graph theoretic characterization for an off-diagonal entry of the inverse of an $M$-matrix to be positive, is…
A vertex coloring of a graph $G$ is called distinguishing if no non-identity automorphisms of $G$ can preserve it. The distinguishing number of $G$, denoted by $D(G)$, is the minimum number of colors required for such a coloring, and the…
A covariance graph is an undirected graph associated with a multivariate probability distribution of a given random vector where each vertex represents each of the different components of the random vector and where the absence of an edge…
A graph $G$ is said to be determined by its generalized spectrum (DGS for short) if for any graph $H$, $H$ and $G$ are cospectral with cospectral complements implies that $H$ is isomorphic to $G$. It turns out that whether a graph $G$ is…
We introduce a novel class of graphical models, termed profile graphical models, that represent, within a single graph, how an external factor influences the dependence structure of a multivariate set of variables. This class is quite…
Graphical network inference is used in many fields such as genomics or ecology to infer the conditional independence structure between variables, from measurements of gene expression or species abundances for instance. In many practical…
We derive conditions for the identifiability of nonlinear networks characterized by additive dynamics at the level of the edges when all the nodes are excited. In contrast to linear systems, we show that the measurement of all sinks is…
The regular models of a normal logic program are a particular type of partial (i.e. 3-valued) models which correspond to stable partial models with minimal undefinedness. In this paper, we explore graphical conditions on the dependency…
The origin of diversification and coexistence of genes and species have been traditionally studied in isolated biological levels. Ecological and evolutionary views have focused on the mechanisms that enable or constrain species coexistence,…
Identifiability conditions for single or multiple modules in a dynamic network specify under which conditions the considered modules can be uniquely recovered from the second-order statistical properties of the measured signals. Conditions…
The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…
The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…
We are interested in the relationships between the number fixed points in a Boolean network $f:\{0,1\}^n\to\{0,1\}^n$ and its interaction graph, which is the arc-signed digraph $G$ on $\{1,\dots,n\}$ that describes the positive and negative…
We introduce a graph generating model aimed at representing the evolution of protein interaction networks. The model is based on the hypotesis of evolution by duplications and divergence of the genes which produce proteins. The obtained…
Inferring genetic networks from gene expression data is one of the most challenging work in the post-genomic era, partly due to the vast space of possible networks and the relatively small amount of data available. In this field, Gaussian…
In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…
In this paper, we address the formal characterization of targets triggering cellular trans-differentiation in the scope of Boolean networks with asynchronous dynamics. Given two fixed points of a Boolean network, we are interested in all…
Intransitivity is a property of connected, oriented graphs representing species interactions that may drive their coexistence even in the presence of competition, the standard example being the three species Rock-Paper-Scissors game. We…
A fundamental and challenging problem in spectral graph theory is to characterize which graphs are uniquely determined by their spectra. In Wang [J. Combin. Theory, Ser. B, 122 (2017): 438-451], the author proved that an $n$-vertex graph…