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In this review, we discuss the applications of the theory of birth-and-death processes to problems in biology, primarily, those of evolutionary genomics. The mathematical principles of the theory of these processes are briefly described.…

Quantitative Methods · Quantitative Biology 2007-05-23 Artem S. Novozhilov , Georgy P. Karev , Eugene V. Koonin

A wide range of stochastic processes that model the growth and decline of populations exhibit a curious dichotomy: with certainty either the population goes extinct or its size tends to infinity. There is a elegant and classical theorem…

Populations and Evolution · Quantitative Biology 2014-09-17 Mike Steel

In a complex community, species continuously adapt to each other. On rare occasions, the adaptation of a species can lead to the extinction of others, and even its own. "Adaptive dynamics" is the standard mathematical framework to describe…

Populations and Evolution · Quantitative Biology 2021-07-13 Vu AT Nguyen , Dervis C Vural

The intrinsic factor that drives the human movement remains unclear for decades. While our observations from intra-urban and inter-urban trips both demonstrate a universal law in human mobility. Be specific, the probability from one…

Physics and Society · Physics 2014-01-17 Xiao Liang , Jichang Zhao , Ke Xu

W. D. Hamilton's celebrated formula for the age-specific force of natural selection furnishes predictions for senescent mortality due to mutation accumulation, at the price of reliance on a linear approximation. Applying to Hamilton's…

Populations and Evolution · Quantitative Biology 2008-07-04 Kenneth W. Wachter , Steven N. Evans , David R. Steinsaltz

Evolution is the process of optimal adaptation of biological populations to their living environments. This is expressed via the concept of fitness, defined as relative reproductive success. However, it has been pointed out that this…

Populations and Evolution · Quantitative Biology 2025-04-17 Luís MA Bettencourt , Brandon J Grandison , Jordan T Kemp

Darwin's theory of evolution is considered to be one of the greatest scientific gems in modern science. It not only gives us a description of how living things evolve, but also shows how a population evolves through time and also, why only…

Machine Learning · Computer Science 2013-12-18 Arka Bhattacharya

Evolution by natural selection, which is one of the most compelling themes of modern science, brought forth evolutionary algorithms and evolutionary computation, applying mechanisms of evolution in nature to various problems solved by…

Neural and Evolutionary Computing · Computer Science 2025-08-27 Eugene Eberbach

This paper outlines astrophysical issues related to the long term fate of the universe. We consider the evolution of planets, stars, stellar populations, galaxies, and the universe itself over time scales which greatly exceed the current…

Astrophysics · Physics 2008-11-26 Fred C. Adams , Gregory Laughlin

There are two contrasting explanations of sleep: as a proximate, essential physiological function or as an adaptive state of inactivity and these hypotheses remain widely debated. To investigate the adaptive significance of sleep, we…

Populations and Evolution · Quantitative Biology 2016-10-04 Jared M. Field , Michael B. Bonsall

We study the biodiversity problem for resource competition systems with extinctions and self-limitation effects. Our main result establishes estimates of biodiversity in terms of the fundamental parameters of the model. We also prove the…

Dynamical Systems · Mathematics 2018-09-12 Vladimir Kozlov , Sergey Vakulenko , Uno Wennergren , Vladimir G. Tkachev

Species coexistence is one of the central themes in modern ecology. Coexistence is a prerequisite of biological diversity. However, the question arises how biodiversity can be reconciled with the statement of competition theory, which…

Populations and Evolution · Quantitative Biology 2007-08-17 Dalius Balciunas

Although Darwinian models are rampant in the social sciences, social scientists do not face the problem that motivated Darwin's theory of natural selection: the problem of explaining how lineages evolve despite that any traits they acquire…

Populations and Evolution · Quantitative Biology 2019-07-09 Liane Gabora

We study the probabilities of evolution based on random mutations and natural selection. We conclude that evolution to multicellular eukaryots, or even prokaryots, is unlikely to be the result of only random mutations. Complex organisms…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Hoeneisen , G. Trueba

Ecological and evolutionary processes show various population dynamics depending on internal interactions and environmental changes. While crucial in predicting biological processes, discovering general relations for such nonlinear dynamics…

Biological Physics · Physics 2022-06-23 Kyosuke Adachi , Ryosuke Iritani , Ryusuke Hamazaki

The adaptation process of a species to a new environment is a significant area of study in biology. As part of natural selection, adaptation is a mutation process which improves survival skills and reproductive functions of species. Here,…

Populations and Evolution · Quantitative Biology 2017-10-27 Maria Kleshnina , Jerzy A. Filar , Vladimir Ejov , Jody C. McKerral

The Turing machine, as it was presented by Turing himself, models the calculations done by a person. This means that we can compute whatever any Turing machine can compute, and therefore we are Turing complete. The question addressed here…

Artificial Intelligence · Computer Science 2016-09-05 Ramón Casares

By introducing the notions of living and dead nodes a new model of random tree evolution with continuous time parameter has been constructed. It is assumed that two random variables, the lifetime and the offspring number of living nodes…

Statistical Mechanics · Physics 2007-05-23 L. Pal

Concomitant with the evolution of biological diversity must have been the evolution of mechanisms that facilitate evolution, due to the essentially infinite complexity of protein sequence space. We describe how evolvability can be an object…

Populations and Evolution · Quantitative Biology 2009-11-10 David J. Earl , Michael W. Deem

It is a common belief that in any environment where life is possible, life will be generated. Here it is suggested that the cause for a spontaneous generation of complex systems is probability driven processes. Based on equilibrium…

Information Theory · Computer Science 2007-11-29 Oded Kafri
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