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We present a new combinatorial model for identifying regulatory modules in gene co-expression data using a decomposition into weighted cliques. To capture complex interaction effects, we generalize the previously-studied weighted edge…

Data Structures and Algorithms · Computer Science 2021-09-08 Madison Cooley , Casey S. Greene , Davis Issac , Milton Pividori , Blair D. Sullivan

Clustering is a standard approach for achieving efficient and scalable performance in wireless sensor networks. Traditionally, clustering algorithms aim at generating a number of disjoint clusters that satisfy some criteria. In this paper,…

Networking and Internet Architecture · Computer Science 2013-04-09 Moustafa Youssef , Adel Youssef , Mohamed Younis

We consider the problem of classifying a map using a team of communicating robots. It is assumed that all robots have localized visual sensing capabilities and can exchange their information with neighboring robots. Using a graph…

Robotics · Computer Science 2021-03-11 Guangyi Liu , Arash Amini , Martin Takáč , Héctor Muñoz-Avila , Nader Motee

Correlation clustering is a central topic in unsupervised learning, with many applications in ML and data mining. In correlation clustering, one receives as input a signed graph and the goal is to partition it to minimize the number of…

Data Structures and Algorithms · Computer Science 2021-06-17 Vincent Cohen-Addad , Silvio Lattanzi , Slobodan Mitrović , Ashkan Norouzi-Fard , Nikos Parotsidis , Jakub Tarnawski

Layered neural networks have greatly improved the performance of various applications including image processing, speech recognition, natural language processing, and bioinformatics. However, it is still difficult to discover or interpret…

Machine Learning · Statistics 2017-10-05 Chihiro Watanabe , Kaoru Hiramatsu , Kunio Kashino

In this paper we consider a network of processors aiming at cooperatively solving linear programming problems subject to uncertainty. Each node only knows a common cost function and its local uncertain constraint set. We propose a…

Optimization and Control · Mathematics 2019-08-27 Mohammadreza Chamanbaz , Giuseppe Notarstefano , Roland Bouffanais

Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique,…

Social and Information Networks · Computer Science 2015-03-10 Ahmet Erdem Sariyuce , C. Seshadhri , Ali Pinar , Umit V. Catalyurek

One of the most remarkable social phenomena is the formation of communities in social networks corresponding to families, friendship circles, work teams, etc. Since people usually belong to several different communities at the same time,…

Physics and Society · Physics 2013-08-16 Balint Toth , Tamas Vicsek , Gergely Palla

DNA pattern matching is essential for many widely used bioinformatics applications. Disease diagnosis is one of these applications, since analyzing changes in DNA sequences can increase our understanding of possible genetic diseases. The…

Hardware Architecture · Computer Science 2022-06-01 Jinane Bazzi , Jana Sweidan , Mohammed E. Fouda , Rouwaida Kanj , Ahmed M. Eltawil

Sparse representations of images are useful in many computer vision applications. Sparse coding with an $l_1$ penalty and a learned linear dictionary requires regularization of the dictionary to prevent a collapse in the $l_1$ norms of the…

Computer Vision and Pattern Recognition · Computer Science 2022-09-09 Katrina Evtimova , Yann LeCun

Subspace sparse coding (SSC) algorithms have proven to be beneficial to clustering problems. They provide an alternative data representation in which the underlying structure of the clusters can be better captured. However, most of the…

Machine Learning · Computer Science 2019-03-14 Babak Hosseini , Barbara Hammer

Patchwork learning arises as a new and challenging data collection paradigm where both samples and features are observed in fragmented subsets. Due to technological limits, measurement expense, or multimodal data integration, such patchwork…

Methodology · Statistics 2024-06-21 Lili Zheng , Andersen Chang , Genevera I. Allen

We study the theoretical performance of a combined approach to demodulation and decoding of binary continuous-phase modulated signals under repetition-like codes. This technique is motivated by a need to transmit packetized or framed data…

Information Theory · Computer Science 2014-04-28 Gaurav Thakur

Modern algorithms for de novo prediction of protein structures typically output multiple full-length models (decoys) rather than a single solution. Subsequent clustering of such decoys is used both to gauge the success of the modelling and…

Biomolecules · Quantitative Biology 2017-12-12 Dmytro Guzenko , Sergei V. Strelkov

A new sparse SOS decomposition algorithm is proposed based on a new sparsity pattern, called cross sparsity patterns. The new sparsity pattern focuses on the sparsity of terms and thus is different from the well-known correlative sparsity…

Optimization and Control · Mathematics 2019-01-23 Jie Wang , Haokun Li , Bican Xia

Prototypical self-supervised learning methods consistently suffer from partial prototype collapse, where multiple prototypes converge to nearly identical representations. This undermines their central purpose -- providing diverse and…

We consider an ensemble of constant composition codes that are subsets of linear codes: while the encoder uses only the constant-composition subcode, the decoder operates as if the full linear code was used, with the motivation of…

Information Theory · Computer Science 2022-06-22 Neri Merhav , Georg Bocherer

This paper aims at a newly raising task in visual surveillance: re-identifying people at a distance by matching body information, given several reference examples. Most of existing works solve this task by matching a reference template with…

Computer Vision and Pattern Recognition · Computer Science 2015-02-03 Yuanlu Xu , Liang Lin , Wei-Shi Zheng , Xiaobai Liu

Here we study an efficient algorithm for decoding the topological codes. It is based on a simple principle, which should allow straightforward generalization to complex decoding problems. It is benchmarked with the planar code for both…

Quantum Physics · Physics 2015-04-10 James R. Wootton

Similarity-preserving hashing is a widely-used method for nearest neighbour search in large-scale image retrieval tasks. For most existing hashing methods, an image is first encoded as a vector of hand-engineering visual features, followed…

Computer Vision and Pattern Recognition · Computer Science 2019-08-17 Hanjiang Lai , Yan Pan , Ye Liu , Shuicheng Yan
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