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Understanding what individual neurons encode is a core question in neuroscience. In primary visual cortex (V1), mathematical models (e.g., Gabor functions) capture neural selectivity, but no comparable framework exists for higher areas. We…

Neurons and Cognition · Quantitative Biology 2026-05-19 Vedang Lad , Katrin Franke , Tamar Rott Shaham , Surya Ganguli , Andreas S. Tolias , Sophia Sanborn , Nikos Karantzas

Encoding models provide a powerful framework for linking continuous stimulus features to neural activity; however, traditional voxelwise approaches are limited by measurement noise, inter-subject variability, and redundancy arising from…

Computation and Language · Computer Science 2026-04-29 Kamya Hari , Taha Binhuraib , Jin Li , Cory Shain , Anna A. Ivanova

First spike latency following stimulus onset is of significant physiological relevance. Neurons transmit information about their inputs by transforming them into spike trains, and the timing of these spike trains is in turn crucial for…

Biological Physics · Physics 2014-03-27 Rukiye Uzun , Mahmut Ozer , Matjaz Perc

Neuron is a noisy information processing unit and conventional view is that information in the cortex is carried on the rate of neurons spike emission. More recent studies on the activity propagation through the homogeneous network have…

Neurons and Cognition · Quantitative Biology 2007-05-23 Kosuke Hamaguchi , Masato Okada , Kazuyuki Aihara

Cells continuously sense their surroundings to detect modifications and generate responses. Very often changes in extracellular concentrations initiate signaling cascades that eventually result in changes in gene expression. Increasing…

Cell Behavior · Quantitative Biology 2024-08-27 Alan Givré , Alejandro Colman-Lerner , Silvina Ponce Dawson

We use mean field theory to study the response properties of a simple randomly-connected model cortical network of leaky integrate-and-fire neurons with balanced excitation and inhibition. The formulation permits arbitrary temporal…

Disordered Systems and Neural Networks · Physics 2007-05-23 John Hertz , Barry Richmond , Kristian Nilsen

In the absence of synaptic coupling, two or more neural oscillators may become synchronized by virtue of the statistical correlations in their noisy input streams. Recent work has shown that the degree of correlation transfer from input…

Dynamical Systems · Mathematics 2015-03-17 Aushra Abouzeid , Bard Ermentrout

Following a stimulus, the neural response typically strongly varies in time and across neurons before settling to a steady-state. While classical population coding theory disregards the temporal dimension, recent works have argued that…

Neurons and Cognition · Quantitative Biology 2019-07-05 Giulio Bondanelli , Srdjan Ostojic

When selective attention is devoted to one of multiple stimuli within receptive fields of neurons in visual area V4, cells respond as if only the attended stimulus was present. The underlying neural mechanisms are still debated, but…

Neurons and Cognition · Quantitative Biology 2023-05-25 Lukas-Paul Rausch , Maik Schünemann , Eric Drebitz , Daniel Harnack , Udo A. Ernst , Andreas K. Kreiter

At the level of individual neurons, various coding properties can be inferred from the input-output relationship of a cell. For small inputs, this relation is captured by the phase-response curve (PRC), which measures the effect of a small…

Neurons and Cognition · Quantitative Biology 2026-01-14 Janina Hesse , Susanne Schreiber

According to the theory of efficient coding, sensory systems are adapted to represent natural scenes with high fidelity and at minimal metabolic cost. Testing this hypothesis for sensory structures performing non-linear computations on high…

Neurons and Cognition · Quantitative Biology 2018-04-13 Ulisse Ferrari , Christophe Gardella , Olivier Marre , Thierry Mora

Neurons communicate with downstream systems via sparse and incredibly brief electrical pulses, or spikes. Using these events, they control various targets such as neuromuscular units, neurosecretory systems, and other neurons in connected…

Neurons and Cognition · Quantitative Biology 2026-03-17 Paolo Agliati , André Urbano , Pablo Lanillos , Nasir Ahmad , Marcel van Gerven , Sander Keemink

Sensory neuroscience seeks to understand how the brain encodes natural environments. However, neural coding has largely been studied using simplified stimuli. In order to assess whether the brain's coding strategy depend on the stimulus…

Neurons and Cognition · Quantitative Biology 2007-05-23 Tatyana O. Sharpee , Hiroki Sugihara , Andrei V. Kurgansky , Sergei P. Rebrik , Michael P. Stryker , Kenneth D. Miller

Precise control of signal propagation in modular neural networks represents a fundamental challenge in computational neuroscience. We establish a framework for identifying optimal control nodes that maximize stimulus transmission between…

Neurons and Cognition · Quantitative Biology 2025-08-18 Bulat Batuev , Arsenii Onuchin , Sergey Sukhov

In this work we study the detection of weak stimuli by spiking neurons in the presence of certain level of noisy background neural activity. Our study has focused in the realistic assumption that the synapses in the network present…

Neurons and Cognition · Quantitative Biology 2009-06-04 Jorge F. Mejias , Joaquin J. Torres

Redundancies and correlations in the responses of sensory neurons seem to waste neural resources but can carry cues about structured stimuli and may help the brain to correct for response errors. To assess how the retina negotiates this…

Neurons and Cognition · Quantitative Biology 2014-03-05 K. D. Simmons , J. S. Prentice , G. Tkacik , J. Homann , H. K. Yee , S. E. Palmer , P. C. Nelson , V. Balasubramanian

The relative timing of action potentials in neurons recorded from local cortical networks often shows a non-trivial dependence, which is then quantified by cross-correlation functions. Theoretical models emphasize that such spike train…

Neurons and Cognition · Quantitative Biology 2017-06-28 Taskin Deniz , Stefan Rotter

Information processing in the brain crucially depends on encoding properties of single neurons, with particular relevance of the spike-generation mechanism. The latter hinges upon the bifurcation type at the transition point between resting…

Neurons and Cognition · Quantitative Biology 2017-05-10 Janina Hesse , Jan-Hendrik Schleimer , Susanne Schreiber

Stochastic integrate-and-fire (IF) neuron models have found widespread applications in computational neuroscience. Here we present results on the white-noise-driven perfect, leaky, and quadratic IF models, focusing on the spectral…

Neurons and Cognition · Quantitative Biology 2015-05-14 Rafael D. Vilela , Benjamin Lindner

We address the problem of identifying functional interactions among stochastic neurons with variable-length memory from their spiking activity. The neuronal network is modeled by a stochastic system of interacting point processes with…

Applications · Statistics 2025-07-01 Ricardo F. Ferreira , Matheus E. Pacola , Vitor G. Schiavone , Rodrigo F. O. Pena