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The conformation space of cyclooctane, a ringlike organic molecule comprising eight carbon atoms, is a two-dimensional algebraic variety, which has been studied extensively for more than 90 years. We propose a cell structure representing…
Compact polyhedra of cubic point symmetry Oh, exhibit surfaces of planar sections (facets) characterized by normal vector families {abc} with up to 48 members each, compatible with Oh symmetry. We focus first on polyhedra confined by facets…
Based on cyclic and consta-cyclic simplex codes, a new explicit construction of a family of two-weight codes is presented. These two-weight codes obtained are in the form of 2-generator quasi-cyclic, or quasi-twisted structure. Based on…
We present an icosahedral quasicrystal as a modification of the icosagrid, a multigrid with 10 plane sets that are arranged with icosahedral symmetry. We use the Fibonacci chain to space the planes, thereby obtaining a quasicrystal with…
Evolution of genetic code is studied as the change in the choice of enzymes that are used to synthesize amino acids from the genetic information of nucleic acids. We propose the following theory: the differentiation of physiological states…
In this paper we study the structure of specific linear codes called DNA codes. The first attempts on studying such codes have been proposed over four element rings which are naturally matched with DNA four letters. Later, double (pair) DNA…
Two new families of self-consistent axisymmetric truncated equilibrium models for the description of quasi-relaxed rotating stellar systems are presented. The first extends the spherical King models to the case of solid-body rotation. The…
In the realm of algebraic geometric (AG) codes, characterizing dual codes has long been a challenging task. In this paper we introduces a generalized criterion to characterize self-orthogonality of AG codes based on residues, drawing upon…
An example of a nonspecific molecular bond is the affinity of any positive charge for any negative charge (like-unlike), or of nonpolar material for itself when in aqueous solution (like-like). This contrasts specific bonds such as the…
We investigate the iterative behaviour of continuous order preserving subhomogeneous maps that map a polyhedral cone into itself. For these maps we show that every bounded orbit converges to a periodic orbit and, moreover, that there exists…
The orientational correlation scheme introduced earlier for tetrahedral molecules is extended for being able to classify orientational correlations between pairs of high symmetry molecules. While in the original algorithm a given…
A geometric analysis of protein folding, which complements many of the models in the literature, is presented. We examine the process from unfolded strand to the point where the strand becomes self-interacting. A central question is how it…
Symmetry plays a fundamental role in physics. The quasi-degeneracy between single-particle orbitals $(n, l, j = l + 1/2)$ and $(n-1, l + 2, j = l + 3/2)$ indicates a hidden symmetry in atomic nuclei, the so-called pseudospin symmetry (PSS).…
A reinterpretation of the complete energy spectrum of the Oxygen-16 nucleus up to 20 MeV, and partly beyond, is proposed. The underlying intrinsic shape of the nucleus is tetrahedral, as in the na\"ive alpha-particle model and other cluster…
Complex systems with tightly coadapted parts frequently appear in living systems and are difficult to account for through Darwinian evolution, that is random variation and natural selection, if the constituent parts are independently coded…
Proteinaceous shells useful for various biomedical applications exhibit a wide range of anomalous structures that are fundamentally different from icosahedral viral capsids described by the Caspar-Klug paradigmatic model. Exploring the…
In nature the three-dimensional structure of a protein is encoded in the corresponding gene. In this paper we describe a new method for encoding the three-dimensional structure of a protein into a binary sequence. The feature of the method…
Generalized quasi-cyclic (GQC) codes form a natural generalization of quasi-cyclic (QC) codes. They are viewed here as mixed alphabet codes over a family of ring alphabets. Decomposing these rings into local rings by the Chinese Remainder…
Many physical systems can be mapped onto solved or "solvable" models of magnetism. In this work, we have mapped the statistical mechanics of columnar phases of ideally helical rigid DNA -- subject to the earlier found unusual, frustrated…
A triaxial projected shell model including configurations with more than four quasiparticles in the configuration space is developed, and applied to investigate the recently reported five chiral doublets candidates in a single even-even…