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Even the simplest of animals exhibit behavioral sequences with complex temporal dynamics. Prominent amongst the proposed organizing principles for these dynamics has been the idea of a hierarchy, wherein the movements an animal makes can be…

Biological Physics · Physics 2017-02-08 Gordon J. Berman , William Bialek , Joshua W. Shaevitz

A novel first-order autoregressive moving average model for analyzing discrete-time series observed at irregularly spaced times is introduced. Under Gaussianity, it is established that the model is strictly stationary and ergodic. In the…

Methodology · Statistics 2022-03-31 Cesar Ojeda , Wilfredo Palma , Susana Eyheramendy , Felipe Elorrieta

The motion of self-propelled particles is modeled as a persistent random walk. An analytical framework is developed that allows the derivation of exact expressions for the time evolution of arbitrary moments of the persistent walk's…

Soft Condensed Matter · Physics 2015-07-28 Zeinab Sadjadi , M. Reza Shaebani , Heiko Rieger , Ludger Santen

Although extensive behavioral changes often exist between closely related animal species, our understanding of the genetic basis underlying the evolution of behavior has remained limited. Here, we propose a new framework to study behavioral…

Populations and Evolution · Quantitative Biology 2020-07-21 Damián G. Hernández , Catalina Rivera , Jessica Cande , Baohua Zhou , David L. Stern , Gordon J. Berman

Diffusion and anomalous diffusion are widely observed and used to study movement across organisms, resulting in extensive use of the mean and mean-squared displacement (MSD). However, these measures - corresponding to specific displacement…

Populations and Evolution · Quantitative Biology 2025-08-14 Ohad Vilk , Motti Charter , Sivan Toledo , Eli Barkai , Ran Nathan

We propose a new model in order to study behaviors of self-organized system such as a group of animals. We assume that the individuals have two degrees of freedom corresponding one to their internal state and the other to their external…

Biological Physics · Physics 2015-10-23 P. The Nguyen , V. Thanh Ngo , H. T. Diep

Animal behavior spans many timescales, from short, seconds-scale actions to circadian rhythms over many hours to life-long changes during aging. Most quantitative behavior studies have focused on short-timescale behaviors such as locomotion…

Biological Physics · Physics 2023-09-11 Grace C. McKenzie-Smith , Scott W. Wolf , Julien F. Ayroles , Joshua W. Shaevitz

Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can…

Quantitative Methods · Quantitative Biology 2014-08-13 Gordon J. Berman , Daniel M. Choi , William Bialek , Joshua W. Shaevitz

We theoretically study the transport properties of self-propelled particles on complex structures, such as motor proteins on filament networks. A general master equation formalism is developed to investigate the persistent motion of…

Soft Condensed Matter · Physics 2014-09-19 M. Reza Shaebani , Zeinab Sadjadi , Igor M. Sokolov , Heiko Rieger , Ludger Santen

Insects exhibit remarkable cognitive skills in the field and several cognitive abilities have been demonstrated in Drosophila in the laboratory. By devising an ethologically relevant experimental setup that also allows comparison of…

Neurons and Cognition · Quantitative Biology 2016-02-17 Shay Cohen , Yoav Benjamini , Ilan Golani

We study a simple model of a forager as a walk that modifies a relaxing substrate. Within it simplicity, this provides an insight on a number of relevant and non-intuitive facts. Even without memory of the good places to feed and no…

Adaptation and Self-Organizing Systems · Physics 2015-06-18 Guillermo Abramson , Marcelo N Kuperman , Juan M Morales , Joel C Miller

We use immobility as an origin and reference for the measurement of locomotor behavior; speed, the direction of walking and the direction of facing as the three degrees of freedom shaping fly locomotor behavior, and cocaine as the parameter…

Neurons and Cognition · Quantitative Biology 2015-07-28 A. Gomez-Marin , E. Oron , A. Gakamsky , D. Valente , Y. Benjamini , I. Golani

Starting from a simple animal-biology example, a general, somewhat counter-intuitive property of diffusion random walks is presented. It is shown that for any (non-homogeneous) purely diffusing system, under any isotropic uniform incidence,…

Statistical Mechanics · Physics 2019-02-20 Stephane Blanco , Fournier Richard

Here we present the first method for tracking each leg of a fruit fly behaving spontaneously upon a trackball, in real time. Legs were tracked with infrared-fluorescent dye invisible to the fly, and compatible with two-photon microscopy and…

Neurons and Cognition · Quantitative Biology 2015-06-11 Jamey Kain , Chris Stokes , Quentin Gaudry , Xiangzhi Song , James Foley , Rachel Wilson , Benjamin de Bivort

The transport equation of active motion is generalised to consider time-fractional dynamics for describing the anomalous diffusion of self-propelled particles observed in many different systems. In the present study, we consider an…

Statistical Mechanics · Physics 2023-10-27 Francisco J. Sevilla , Guillermo Chacón-Acosta , Trifce Sandev

Saving energy and enhancing performance are secular preoccupations shared by both nature and human beings. In animal locomotion, flapping flyers or swimmers rely on the flexibility of their wings or body to passively increase their…

Biological Physics · Physics 2011-08-30 Sophie Ramananarivo , Ramiro Godoy-Diana , Benjamin Thiria

Diffusive dynamics abound in nature and have been especially studied in physical, biological, and financial systems. These dynamics are characterised by a linear growth of the mean squared displacement (MSD) with time. Often, the conditions…

Statistical Mechanics · Physics 2025-11-14 Alvaro Lanza , Xiang Qu , Stefano Bo

We study a simple model of a foraging animal that modifies the substrate on which it moves. This substrate provides its only resource, and the forager manage it by taking a limited portion at each visited site. The resource recovers its…

Populations and Evolution · Quantitative Biology 2016-11-23 Laila Daniela Kazimierski , Guillermo Abramson , Marcelo Néstor Kuperman

Scale-free foraging patterns are widespread among animals. These may be the outcome of an optimal searching strategy to find scarce randomly distributed resources, but a less explored alternative is that this behaviour may result from the…

Populations and Evolution · Quantitative Biology 2007-05-23 Denis Boyer , Gabriel Ramos-Fernández , Octavio Miramontes , José L. Mateos , Germinal Cocho , Hernán Larralde , Humberto Ramos , Fernando Rojas

A freely walking fly visits roughly 100 stereotyped states in a strongly non-Markovian sequence. To explore these dynamics, we develop a generalization of the information bottleneck method, compressing the large number of behavioral states…

Neurons and Cognition · Quantitative Biology 2021-01-01 Vasyl Alba , Gordon J. Berman , William Bialek , Joshua W. Shaevitz
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