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Related papers: Untying molecular friction knots

200 papers

We present a numerical study of the effect of knotting on the ejection of flexible and semiflexible polymers from a spherical, virus-like capsid. The polymer ejection rate is primarily controlled by the knot, which moves to the hole in the…

Biomolecules · Quantitative Biology 2009-02-23 R Matthews , A. A. Louis , J. M. Yeomans

We investigate the influence of particle stiffness on the grasping performance of granular grippers, a class of soft robotic effectors that utilize granular jamming for object manipulation. Through experimental analyses and X-ray imaging,…

Soft Condensed Matter · Physics 2024-07-31 Angel Santarossa , Thorsten Pöschel

A knot in a thickened surface $K$ is a smooth embedding $K:S^1 \rightarrow \Sigma \times [0,1]$, where $\Sigma$ is a closed, connected, orientable surface. There is a bijective correspondence between knots in $S^2 \times [0,1]$ and knots in…

Geometric Topology · Mathematics 2019-05-10 James Kreinbihl

The statistical mechanics of a ribbon polymer made up of two semiflexible chains is studied using both analytical techniques and simulation. The system is found to have a crossover transition at some finite temperature, from a type of short…

Soft Condensed Matter · Physics 2009-10-31 Ramin Golestanian , Tanniemola B. Liverpool

We prove the fractal crumpled structure of collapsed unknotted polymer ring. In this state the polymer chain forms a system of densely packed folds, mutually separated in all scales. The proof is based on the numerical and analytical…

Statistical Mechanics · Physics 2007-05-23 Sergei Nechaev , Oleg Vasilyev

We review the present state of understanding of solid friction at low velocities and for systems with negligibly small wear effects. We first analyze in detail the behavior of friction at interfaces between wacroscopic hard rough solids,…

Soft Condensed Matter · Physics 2015-06-25 Tristan Baumberger , Christiane Caroli

Inspired by the ubiquity of composite filamentous networks in nature we investigate models of biopolymer networks that consist of interconnected floppy and stiff filaments. Numerical simulations carried out in three dimensions allow us to…

Biomolecules · Quantitative Biology 2015-05-19 Elisabeth M. Huisman , Claus Heussinger , Cornelis Storm , Gerard T. Barkema

We report on a computational study of the statics and dynamics of long flexible linear polymers that spontaneously knot and unknot. Specifically, the equilibrium self-entanglement properties, such as the knotting probability, knot length…

Soft Condensed Matter · Physics 2013-04-15 Luca Tubiana , Angelo Rosa , Filippo Fragiacomo , Cristian Micheletti

The (isothermic) compressibility of lattice knots can be examined as a model of the effects of topology and geometry on the compressibility of ring polymers. In this paper, the compressibility of minimal length lattice knots in the simple…

Soft Condensed Matter · Physics 2015-06-04 Esaias J Janse van Rensburg , Andrew Rechnitzer

Microscale granular sliding within fault gouge is fundamental to earthquake nucleation, yet the mechanism by which temperature affects friction through interfacial water remains poorly understood. Here, large-scale molecular dynamics…

Geophysics · Physics 2026-03-19 Li Wang , Jie Meng , Dongpo Wang , Gongji Zhang , Helge Hellevang

The non-equilibrium structural and dynamical properties of a flexible polymer tethered to a reflecting wall and subject to oscillatory linear flow are studied by numerical simulations. Polymer is confined in two dimensions and is modeled as…

Soft Condensed Matter · Physics 2024-07-30 A. Lamura

We experimentally study the unjamming dynamics of strongly compressed particle rafts confined between two fixed walls and two movable barriers. The back barrier is made of an elastic band, whose deflection indicates the local stress. The…

Soft Condensed Matter · Physics 2022-10-03 Gregor Plohl , Mathieu Jannet , Carole Planchette

Sliding along frictional interfaces separating dissimilar elastic materials is qualitatively different from sliding along interfaces separating identical materials due to the existence of an elastodynamic coupling between interfacial slip…

Materials Science · Physics 2017-12-07 Michael Aldam , Shiqing Xu , Efim A. Brener , Yehuda Ben-Zion , Eran Bouchbinder

We consider the problem of an inextensible but flexible fiber advected by a steady chaotic flow, and ask the simple question whether the fiber can spontaneously knot itself. Using a 1D Cosserat model, a simple local viscous drag model and…

Soft Condensed Matter · Physics 2021-04-21 Benjamin Favier

A computationally-efficient method for evaluating friction in molecular rotary bearings is presented. This method estimates drag from fluctuations in molecular dynamics simulations via the fluctuation-dissipation theorem. This is effective…

Soft Condensed Matter · Physics 2017-08-09 Tad Hogg , Matthew S. Moses , Damian G. Allis

Sliding friction between two dry surfaces is reasonably described by the speed-independent Amonton-Coulomb friction force law. However, there are many situations where the frictional contact points between two surfaces are "active" and may…

Soft Condensed Matter · Physics 2025-01-17 Rohan Shah , Nick Gravish

Entanglement of polymer chains is ubiquitous in elastomers, gels, and biological tissues. While the effects of chain entanglement on elasticity and viscoelasticity of polymer networks have been intensively studied, it remains elusive how…

Soft Condensed Matter · Physics 2021-12-24 Dongchang Zheng , Shaoting Lin , Jiahua Ni , Xuanhe Zhao

This paper examines the effect of cooling on disentanglement forces in polymers and the implications for both single chain pullout and polymer dynamics. I derive the explicit dependence of the distribution of these forces on temperature,…

Statistical Mechanics · Physics 2007-05-23 Raphael Blumenfeld

We study the nature of the frictional jamming transition within the framework of rigidity percolation theory. Slowly sheared frictional packings are decomposed into rigid clusters and floppy regions with a generalization of the pebble game…

Soft Condensed Matter · Physics 2016-01-20 Silke Henkes , David A. Quint , Y. Fily , J. M. Schwarz

Natural materials often feature a combination of soft and stiff phases, arranged to achieve excellent mechanical properties, such as high strength and toughness. Many natural materials have even independently evolved to have similar…

Soft Condensed Matter · Physics 2025-07-03 Chelsea Fox , Kyrillos Bastawros , Tommaso Magrini , Chiara Daraio