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We discuss an implementation of molecular dynamics (MD) simulations on a graphic processing unit (GPU) in the NVIDIA CUDA language. We tested our code on a modern GPU, the NVIDIA GeForce 8800 GTX. Results for two MD algorithms suitable for…

Other Condensed Matter · Physics 2008-09-10 J. A. van Meel , A. Arnold , D. Frenkel , S. F. Portegies Zwart , R. G. Belleman

Graphics processing units (GPUs) are recently being used to an increasing degree for general computational purposes. This development is motivated by their theoretical peak performance, which significantly exceeds that of broadly available…

Computational Physics · Physics 2015-03-17 Martin Weigel

Reactive molecular dynamics simulations are computationally demanding. Reaching spatial and temporal scales where interesting scientific phenomena can be observed requires efficient and scalable implementations on modern hardware. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-26 Hasan Metin Aktulga , Christopher Knight , Paul Coffman , Kurt A. O'Hearn , Tzu-Ray Shan , Wei Jiang

Current soft processor architectures for FPGAs do not utilize the potential of the massive parallelism available. FPGAs now support many thousands of embedded floating point operators, and have similar computational densities to GPGPUs.…

Hardware Architecture · Computer Science 2024-01-10 Martin Langhammer , George A. Constantinides

Largely due to their increased native capacity for numerical intensity and power efficiency, reduced-precision floating-point computing resources, primarily used in artificial intelligence (AI) applications, have expanded at a greater rate…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-19 Harun Bayraktar , Cole Brower , John Gunnels , Greg Henry , Cherin Joseph , Jack Kosaian , Dmitry Lyakh , Lukas Mosimann , Victor Podlozhnyuk , Addison Richards , Paul Springer , Haicheng Wu

The performance of the emerging petaflops-scale supercomputers of the nearest future (hypercomputers) will be governed not only by the clock frequency of the processing nodes or by the width of the system bus, but also by such factors as…

Performance · Computer Science 2011-11-21 Dmitry Zinoviev

The high arithmetic performance and intrinsic parallelism of recent graphical processing units (GPUs) can offer a technological edge for molecular dynamics simulations. ACEMD is a production-class bio-molecular dynamics (MD) simulation…

Computational Physics · Physics 2009-02-06 M. J. Harvey , G. Giupponi , G. De Fabritiis

Beamforming is a well-known technique to combine signals from multiple sensors. It has a wide range of application domains. This paper introduces the Tensor-Core Beamformer: a generic, optimized beamformer library that harnesses the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-07 Leon Oostrum , Bram Veenboer , Ronald Rook , Michael Brown , Pieter Kruizinga , John W. Romein

We accelerated an ab-initio molecular QMC calculation by using GPGPU. Only the bottle-neck part of the calculation is replaced by CUDA subroutine and performed on GPU. The performance on a (single core CPU + GPU) is compared with that on a…

Computational Physics · Physics 2012-04-06 Yutaka Uejima , Tomoharu Terashima , Ryo Maezono

Multiple beyond-CMOS information processing devices are presently under active research and require methods of benchmarking them. A new approach for calculating the performance metric, energy-delay product, of such devices is proposed. The…

Mesoscale and Nanoscale Physics · Physics 2015-06-17 Angik Sarkar , Dmitri E. Nikonov , Ian A. Young , Behtash Behin-Aein , Supriyo Datta

Simulators are a primary tool in computer architecture research but are extremely computationally intensive. Simulating modern architectures with increased core counts and recent workloads can be challenging, even on modern hardware. This…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-27 Rodrigo Huerta , Antonio González

The graphics processing unit (GPU) has emerged as a powerful and cost effective processor for general performance computing. GPUs are capable of an order of magnitude more floating-point operations per second as compared to modern central…

Computation · Statistics 2012-07-24 Mark Franey , Pritam Ranjan , Hugh Chipman

Despite computation becomes much complex on data with an unprecedented scale, we argue computers or smart devices should and will consistently provide information and knowledge to human being in the order of a few tens milliseconds. We coin…

Performance · Computer Science 2017-03-09 Gang Lu , Jianfeng Zhan , Tianshu Hao , Lei Wang

Deep learning based superresolution achieves high-quality results, but its heavy computational workload, large buffer, and high external memory bandwidth inhibit its usage in mobile devices. To solve the above issues, this paper proposes a…

Hardware Architecture · Computer Science 2022-05-10 An-Jung Huang , Kai-Chieh Hsu , Tian-Sheuan Chang

In this paper, we present GATSPI, a novel GPU accelerated logic gate simulator that enables ultra-fast power estimation for industry sized ASIC designs with millions of gates. GATSPI is written in PyTorch with custom CUDA kernels for ease…

Machine Learning · Computer Science 2022-03-14 Yanqing Zhang , Haoxing Ren , Akshay Sridharan , Brucek Khailany

Next-generation mixed-criticality Systems-on-chip (SoCs) for robotics, automotive, and space must execute mixed-criticality AI-enhanced sensor processing and control workloads, ensuring reliable and time-predictable execution of critical…

High-performance computing, together with a neural network model trained from data generated with first-principles methods, has greatly boosted applications of \textit{ab initio} molecular dynamics in terms of spatial and temporal scales on…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-06 Zhuoqiang Guo , Denghui Lu , Yujin Yan , Siyu Hu , Rongrong Liu , Guangming Tan , Ninghui Sun , Wanrun Jiang , Lijun Liu , Yixiao Chen , Linfeng Zhang , Mohan Chen , Han Wang , Weile Jia

We consider the setting of a sensor that consists of a speed-scalable processor, a battery, and a solar cell that harvests energy from its environment at a time-invariant recharge rate. The processor must process a collection of jobs of…

Data Structures and Algorithms · Computer Science 2016-09-12 Neal Barcelo , Peter Kling , Michael Nugent , Kirk Pruhs

In the past couple of decades, the computational abilities of supercomput- ers have increased tremendously. Leadership scale supercomputers now are capable of petaflops. Likewise, the problem size targeted by applications running on such…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-09-06 Robert Louis Cloud

The limited energy available in most embedded systems poses a significant challenge in enhancing the performance of embedded processors and microcontrollers. One promising approach to address this challenge is the use of approximate…

Hardware Architecture · Computer Science 2024-10-10 Arvin Delavari , Faraz Ghoreishy , Hadi Shahriar Shahhoseini , Sattar Mirzakuchaki
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