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Related papers: Dynamic detection of a single bacterium: nonlinear…

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Bacterial processes ranging from gene expression to motility and biofilm formation are constantly challenged by internal and external noise. While the importance of stochastic fluctuations has been appreciated for chemotaxis, it is…

Biological Physics · Physics 2011-07-13 Knut Drescher , Jörn Dunkel , Luis H. Cisneros , Sujoy Ganguly , Raymond E. Goldstein

E. coli bacteria swim following a run and tumble pattern. In the run state all flagella join in a single helical bundle that propels the cell body along approximately straight paths. When one or more flagellar motors reverse direction the…

Soft Condensed Matter · Physics 2015-07-01 S. Bianchi , F. Saglimbeni , A. Lepore , R. Di Leonardo

Dislocations, line defects in crystalline materials, play an essential role in the mechanical[1,2], electrical[3], optical[4], thermal[5], and phase transition[6] properties of these materials. Dislocation motion, an important mechanism…

Materials Science · Physics 2023-07-04 Mingqiang Li , Yidi Shen , Kun Luo , Qi An , Peng Gao , Penghao Xiao , Yu Zou

The heterogeneity of reaction fluxes present in a metabolic network within a single flux state can be exploited to construct the so-called backbone as a reduced version of metabolism. The backbone maintains all significant fluxes producing…

Molecular Networks · Quantitative Biology 2016-02-23 Oriol Güell , Francesc Sagués , M. Ángeles Serrano

Sedimentation in active fluids has come into focus due to the ubiquity of swimming micro-organisms in natural and artificial environments. Here, we experimentally investigate sedimentation of passive particles in water containing various…

Fluid Dynamics · Physics 2017-10-12 Jaspreet Singh , Alison E. Patteson , Prashant K. Purohit , Paulo E. Arratia

Due to their morphology, the dynamics of bacteria suspended in media can exhibit complex behaviors. In the presence of a shear, swimming bacteria experience a drift perpendicular to the shear plane. This drift, termed rheotaxis, is studied…

Many types of molecular motors have been proposed and synthesized in recent years, displaying different kinds of motion, and fueled by different driving forces such as light, heat, or chemical reactions. We propose a new type of molecular…

Mesoscale and Nanoscale Physics · Physics 2010-11-24 Johannes S. Seldenthuis , Ferry Prins , Joseph M. Thijssen , Herre S. J. van der Zant

External control of the swimming speed of `active particles' can be used to self assemble designer structures in situ on the micrometer to millimeter scale. We demonstrate such reconfigurable templated active self assembly in a fluid…

Soft Condensed Matter · Physics 2018-02-23 Jochen Arlt , Vincent A Martinez , Angela Dawson , Teuta Pilizota , Wilson C K Poon

Near field hydrodynamic interactions are essential to determine many important emergent behaviors observed in active suspensions, but have not been successfully modeled so far. In this work we propose an effective model capable of…

Soft Condensed Matter · Physics 2020-02-13 Bokai Zhang , Yang Ding , Xinliang Xu

Magnetic skyrmions are localised non-collinear spin textures with high potential for future spintronic applications. Skyrmion phases have been discovered in a number of materials and a focus of current research is the preparation,…

Microscopic Imaging Ellipsometry is an optical technique that uses an objective and sensing procedure to measure the ellipsometric parameters {\Psi} and {\Delta} in the form of microscopic maps. This technique is well known for being…

Biological Physics · Physics 2017-06-07 Mai Ibrahim Khaleel , Yu-Da Chen , Ching-Hang Chien , Yia-Chung Chang

We study a model of self propelled particles exhibiting run and tumble dynamics on lattice. This non-Brownian diffusion is characterised by a random walk with a finite persistence length between changes of direction, and is inspired by the…

Statistical Mechanics · Physics 2015-03-17 A. G. Thompson , J. Tailleur , M. E. Cates , R. A. Blythe

Correlations between stellar chemistry and kinematics have long been used to gain insight into the evolution of the Milky Way Galaxy. Orbital angular momentum is a key physical parameter and it is often estimated from three-dimensional…

The ribosome is one of the most important macromolecular complexes in a living cell. We have tracked individual 30S ribosomal subunits in exponentially growing E. coli cells using three-dimensional single-particle tracking, where the…

Quantitative Methods · Quantitative Biology 2012-06-14 Arash Sanamrad , Fredrik Persson , Johan Elf

We controlled and observed individual magnetotactic bacteria (Magnetospirillum gryphiswaldense) inside a 5 {\mu}m high microfluidic channel for over four hours. After a period of constant velocity, the duration of which varied between…

Rolling of a small sphere on a solid support is governed by a non-linear friction that is akin to the Coulombic dry fiction. No motion occurs when the external field is weaker than the frictional resistance. However, with the intervention…

Statistical Mechanics · Physics 2012-03-22 P. S. Goohpattader , M. K. Chaudhury

Diverse processes--e.g. bioremediation, biofertilization, and microbial drug delivery--rely on bacterial migration in disordered, three-dimensional (3D) porous media. However, how pore-scale confinement alters bacterial motility is unknown…

Soft Condensed Matter · Physics 2019-05-09 Tapomoy Bhattacharjee , Sujit S. Datta

We present an optical tweezer based study of rotation of microscopic objects with shape asymmetry. Thermal fluctuations and rotations are simultaneously monitored through laser back scattering. The rotation results in a modulation in…

Soft Condensed Matter · Physics 2011-02-16 Yogesha , Sarbari Bhattacharya , Sharath Ananthamurthy

By performing a global magneto-hydrodynamical simulation for the Milky Way with an axisymmetric gravitational potential, we propose that spatially dependent amplification of magnetic fields possibly explains the observed noncircular motion…

Astrophysics of Galaxies · Physics 2015-10-28 Takeru K. Suzuki , Yasuo Fukui , Kazufumi Torii , Mami Machida , Ryoji Matsumoto

We present period measurements of a large sample of field stars in the solar neighbourhood, observed by CoRoT in two different directions of the Galaxy. The presence of a period was detected using the Scargle Lomb Normalized Periodogram…

Solar and Stellar Astrophysics · Physics 2015-06-04 Laura Affer , Giuseppina Micela , Fabio Favata , Ettore Flaccomio