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Related papers: Synchronization Properties of Network Motifs

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Graph Neural Networks (GNNs) are a predominant method for graph representation learning. However, beyond subgraph frequency estimation, their application to network motif significance-profile (SP) prediction remains under-explored, with no…

Machine Learning · Computer Science 2025-07-11 Pedro C. Vieira , Miguel E. P. Silva , Pedro Manuel Pinto Ribeiro

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

Given a dynamic network, where edges appear and disappear over time, we are interested in finding sets of edges that have similar temporal behavior and form a dense subgraph. Formally, we define the problem as the enumeration of the maximal…

Social and Information Networks · Computer Science 2021-03-02 Giulia Preti , Polina Rozenshtein , Aristides Gionis , Yannis Velegrakis

A $k$-motif (or graphlet) is a subgraph on $k$ nodes in a graph or network. Counting of motifs in complex networks has been a well-studied problem in network analysis of various real-word graphs arising from the study of social networks and…

Social and Information Networks · Computer Science 2020-04-02 Taha Sevim , Muhammet Selçuk Güvel , Lale Özkahya

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

Motifs are the fundamental components of complex systems. The topological structure of networks representing complex systems and the frequency and distribution of motifs in these networks are intertwined. The complexities associated with…

Social and Information Networks · Computer Science 2020-05-21 Ali Jazayeri , Christopher C. Yang

In this paper, subgraphs and complementary graphs are used to analyze the network synchronizability. Some sharp and attainable bounds are provided for the eigenratio of the network structural matrix, which characterizes the network…

Networking and Internet Architecture · Computer Science 2009-11-13 Zhisheng Duan , Chao Liu , Guanrong Chen

In physics, biology and engineering, network systems abound. How does the connectivity of a network system combine with the behavior of its individual components to determine its collective function? We approach this question for networks…

Neurons and Cognition · Quantitative Biology 2018-12-19 Yu Hu , Steven L. Brunton , Nicholas Cain , Stefan Mihalas , J. Nathan Kutz , Eric Shea-Brown

In this paper, the investigation is first motivated by showing two examples of simple regular symmetrical graphs, which have the same structural parameters, such as average distance, degree distribution and node betweenness centrality, but…

Combinatorics · Mathematics 2007-06-21 Zhisheng Duan , Guanrong Chen , Lin Huang

Synchronization of networked oscillators is known to depend fundamentally on the interplay between the dynamics of the graph's units and the microscopic arrangement of the network's structure. For non identical elements, the lack of…

Adaptation and Self-Organizing Systems · Physics 2016-01-20 A. Navas , J. A. Villacorta-Atienza , I. Leyva , J. A. Almendral , I. Sendiña-Nadal , S. Boccaletti

We consider that a network is an observation, and a collection of observed networks forms a sample. In this setting, we provide methods to test whether all observations in a network sample are drawn from a specified model. We achieve this…

Methodology · Statistics 2020-04-17 P-A. G. Maugis , Carey E. Priebe , S. C. Olhede , P. J. Wolfe

We study the problem of testing for community structure in networks using relations between the observed frequencies of small subgraphs. We propose a simple test for the existence of communities based only on the frequencies of three-node…

Methodology · Statistics 2017-10-17 Chao Gao , John Lafferty

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to…

Social and Information Networks · Computer Science 2018-01-08 Ashwin Paranjape , Austin R. Benson , Jure Leskovec

Signed networks have been a topic of recent interest in the network control community as they allow studying antagonistic interactions in multi-agent systems. Although dynamical characteristics of signed networks have been well-studied,…

Optimization and Control · Mathematics 2017-07-13 Siavash Alemzadeh , Mathias Hudoba de Badyn , Mehran Mesbahi

This paper deals with identifiability of undirected dynamical networks with single-integrator node dynamics. We assume that the graph structure of such networks is known, and aim to find graph-theoretic conditions under which the state…

Optimization and Control · Mathematics 2018-07-24 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

Symmetries are an essential feature of complex networks as they regulate how the graph collective dynamics organizes into clustered states. We here show how to control network symmetries, and how to enforce patterned states of…

Physics and Society · Physics 2020-11-24 L. V. Gambuzza , M. Frasca , F. Sorrentino , L. M. Pecora , S. Boccaletti

One of the most common approaches to the analysis of dynamic networks is through time-window aggregation. The resulting representation is a sequence of static networks, i.e. the snapshot graph. Despite this representation being widely used…

Social and Information Networks · Computer Science 2021-12-07 Alessandro Chiappori , Rémy Cazabet

In the study of dynamical systems on networks/graphs, a key theme is how the network topology influences stability for steady states or synchronized states. Ideally, one would like to derive conditions for stability or instability that…

Dynamical Systems · Mathematics 2020-07-01 Raffaella Mulas , Christian Kuehn , Jürgen Jost

This paper introduces a probabilistic approach for tracking the dynamics of unweighted and directed graphs using state-space models (SSMs). Unlike conventional topology inference methods that assume static graphs and generate point-wise…

Signal Processing · Electrical Eng. & Systems 2024-09-13 Victor M. Tenorio , Elvin Isufi , Geert Leus , Antonio G. Marques