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Calculations are carried out to determine elastic scattering cross sections and resonance energies for low energy electron impact on uracil and on each of the DNA bases (thymine, cytosine, adenine, guanine), for isolated molecules in their…

Chemical Physics · Physics 2009-11-11 Stefano Tonzani , Chris H. Greene

Using high-quality gas phase electron scattering calculations and multiple scattering theory, we attempt to gain insights on the radiation damage to DNA induced by secondary low-energy electrons in the condensed phase, and to bridge the…

Chemical Physics · Physics 2009-11-13 Laurent Caron , Stefano Tonzani , Chris H. Greene , Leon Sanche

Due to the physical and chemical processes that are involved, interactions of ionizing radiations with cells lead to single- and double-strand breaks (SSB and DSB) and base damage to DNA cells. The damage may kill the cells or may be…

Elucidating the significance of low-energy electrons in the rupture of DNA/RNA and the process involved in it is crucial in the field of radiation therapy. Capturing of the incident electron in one of the empty molecular orbitals and the…

Atomic and Molecular Clusters · Physics 2024-10-21 Snigdha Sharma , Dhanoj Gupta

We present a multi-scale simulation of early stage of DNA damages by the indirect action of hydroxyl ($^\bullet$OH) free radicals generated by electrons and protons. The computational method comprises of interfacing the Geant4-DNA Monte…

Biological Physics · Physics 2015-06-17 Ramin M. Abolfath , David J. Carlson , Zhe J. Chen , Ravinder Nath

The radiation-induced damages in bio-molecules are ubiquitous processes in radiotherapy, radio-biology and critical to space-projects. In this study we present a precise quantification of the fragmentation mechanisms of deoxyribonucleic…

Biological Physics · Physics 2022-01-28 Santosh KC , Ramin Abolfath

This paper is devoted to the analysis of the complex damage of DNA irradiated by ions. The analysis and assessment of complex damage is important because cells in which it occurs are less likely to survive because the DNA repair mechanisms…

Biological Physics · Physics 2012-01-30 Eugene Surdutovich , David C. Gallagher , Andrey V. Solov'yov

We propose an inclusive approach for calculating characteristics of secondary electrons produced by ions/protons in tissue-like media. This approach is based on an analysis of the projectile's interaction with the medium on the microscopic…

Biological Physics · Physics 2009-11-13 E. Surdutovich , O. I. Obolensky , E. Scifoni , I. Pshenichnov , I. Mishustin , A. V. Solov'yov , W. Greiner

The lack of molecular-level understanding for the electronic excitation response of DNA to charged particle radiation, such as high-energy protons, remains a fundamental scientific bottleneck in advancing proton and other ion beam cancer…

Soft Condensed Matter · Physics 2023-03-17 Christopher Shepard , Dillon Yost , Yosuke Kanai

This paper describes the model for DNA in MATLAB taking into account all of component atoms. In this model, it is possible to generate sequences with length 10000 basis pairs available for introducing all types of sequences. Once the…

Medical Physics · Physics 2019-05-14 Alexandra Pinto Castellanos

Resonant scattering of electrons with low energies (as compared to the bandwidth) on a single neutral short-range impurity in graphene is analyzed theoretically, taking into account the valley degeneracy. Resonances dramatically increase…

Materials Science · Physics 2009-11-13 D. M. Basko

We review the experimental and theoretical status of elastic electron scattering and elastic low-energy photon scattering (with both real and virtual photons) from the nucleon. As a consequence of new experimental facilities and new…

Nuclear Experiment · Physics 2008-11-26 Charles Earl Hyde-Wright , Kees de Jager

Radiation damage is an unavoidable process when performing structural investigations of biological macromolecules with X-ray sources. In crystallography this process can be limited through damage distribution in a crystal, while for single…

Materials Science · Physics 2009-11-13 C. Caleman , C. Ortiz , E. Marklund , F. Bultmark , M. Gabrysch , F. G. Parak , J. Hajdu , M. Klintenberg , N. Timneanu

The interaction of heavy charged particles with DNA is of interest for several areas, from hadrontherapy to aero-space industry. In this paper, a TD-DFT study on the interaction of a 4 keV proton with an isolated DNA base pair was carried…

Biological Physics · Physics 2019-05-10 R. Seraide , M. A. Bernal , G. Brunetto , U. de Giovannini , A. Rubio

Positions of protons in DNA hydrogen bonds are fundamental for the fidelity of the replication process. Because the hydrogen bond is partially covalent the electronic structure of DNA plays an important role in the replication process.…

Strongly Correlated Electrons · Physics 2007-05-23 Chun-Min Chang , A. H. Castro Neto , A. R. Bishop

Motivated by the wide ranging experimental results on the conductivity of DNA, we have investigated extraordinary configurations and chemical environments in which DNA might become a true molecular wire, perticularly from enhanced…

Soft Condensed Matter · Physics 2009-09-29 R. G. Endres , D. L. Cox , R. R. P. Singh

We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

Materials Science · Physics 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume

We present a model for electron- and neutrino-scattering off nucleons and nuclei focussing on the quasielastic and resonance region. The lepton-nucleon reaction is described within a relativistic formalism that includes, besides…

Nuclear Theory · Physics 2009-04-03 T. Leitner , O. Buss , L. Alvarez-Ruso , U. Mosel

The scattering of electromagnetic radiation by the particle gyrating in an external magnetic field is considered. Particular attention is paid to the low-frequency case, when the frequencies of incident radiation are much less than the…

Astrophysics · Physics 2009-11-13 S. A. Petrova

In this present work we report the results of our investigation on the electronic specific heat (ESH) of DNA molecule modelled within the tight-binding framework. We take four different DNA sequences ranging from periodic, quasi-periodic to…

Mesoscale and Nanoscale Physics · Physics 2015-06-08 Sourav Kundu , S. N. Karmakar
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