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We introduce a method to estimate the complexity function of symbolic dynamical systems from a finite sequence of symbols. We test such complexity estimator on several symbolic dynamical systems whose complexity functions are known exactly.…

Populations and Evolution · Quantitative Biology 2017-01-19 R. Salgado-Garcia , E. Ugalde

A measure called Physical Complexity is established and calculated for a population of sequences, based on statistical physics, automata theory, and information theory. It is a measure of the quantity of information in an organism's genome.…

Biological Physics · Physics 2011-12-02 Gerard Briscoe , Philippe De Wilde

This commentary discusses a recently proposed measure of heterogeneity of DNA sequences and compares with the measures of complexity.

adap-org · Physics 2012-05-07 Wentian Li

A practical measure for the complexity of sequences of symbols (``strings'') is introduced that is rooted in automata theory but avoids the problems of Kolmogorov-Chaitin complexity. This physical complexity can be estimated for ensembles…

adap-org · Physics 2009-10-28 C. Adami , N. J. Cerf

We define a notion of complexity, which quantifies the nonlinearity of the computation of a neural network, as well as a complementary measure of the effective dimension of feature representations. We investigate these observables both for…

Machine Learning · Computer Science 2021-03-18 Romuald A. Janik , Przemek Witaszczyk

Shannon entropy is widely used to measure the complexity of DNA sequences but suffers from saturation effects that limit its discriminative power for long uniform segments. We introduce a novel metric, the entropy rank ratio R, which…

Information Theory · Computer Science 2025-11-10 Emmanuel Pio Pastore , Giuseppe Passarino , Peppino Sapia , Francesco De Rango

We study the build up of complexity on the example of 1 kg matter in different forms. We start on the simplest example of ideal gases, and then continue with more complex chemical, biological, life and social and technical structures. We…

Other Quantitative Biology · Quantitative Biology 2017-01-19 L. P. Csernai , S. F. Spinnangr , S. Velle

There is no single universally accepted definition of "Complexity". There are several perspectives on complexity and what constitutes complex behaviour or complex systems, as opposed to regular, predictable behaviour and simple systems. In…

Data Analysis, Statistics and Probability · Physics 2018-01-17 Nithin Nagaraj , Karthi Balasubramanian

The goal of this paper is to develop an estimate for the entropy of random long-range correlated symbolic sequences with elements belonging to a finite alphabet. As a plausible model, we use the high-order additive stationary ergodic Markov…

Information Theory · Computer Science 2014-12-12 S. S. Melnik , O. V. Usatenko

The linear complexity is a measure for the unpredictability of a sequence over a finite field and thus for its suitability in cryptography. In 2012, Diem introduced a new figure of merit for cryptographic sequences called expansion…

Number Theory · Mathematics 2016-06-22 László Mérai , Harald Niederreiter , Arne Winterhof

This work presents a new approach for classification of genomic sequences from measurements of complex networks and information theory. For this, it is considered the nucleotides, dinucleotides and trinucleotides of a genomic sequence. For…

Computational Engineering, Finance, and Science · Computer Science 2014-12-19 Bruno Mendes Moro Conque , André Yoshiaki Kashiwabara , Fabrício Martins Lopes

We propose a new type of entropic descriptor that is able to quantify the statistical complexity (a measure of complex behaviour) by taking simultaneously into account the average departures of a system's entropy S from both its maximum…

Statistical Mechanics · Physics 2015-05-13 R. Piasecki , A. Plastino

Infinite sequences are of tremendous theoretical and practical importance, and in the Information Age sequences of 0s and 1s are of particular interest. Over the past century, the field of symbolic dynamics has developed to study sequences…

Dynamical Systems · Mathematics 2025-04-02 Natalie Priebe Frank , May Mei , Kitty Yang

This paper aims to define, quantify, and analyze the feature complexity that is learned by a DNN. We propose a generic definition for the feature complexity. Given the feature of a certain layer in the DNN, our method disentangles feature…

Machine Learning · Computer Science 2023-12-04 Jie Ren , Mingjie Li , Zexu Liu , Quanshi Zhang

In this chapter, a statistical measure of complexity is introduced and some of its properties are discussed. Also, some straightforward applications are shown.

Adaptation and Self-Organizing Systems · Physics 2010-09-09 Ricardo Lopez-Ruiz , Hector Mancini , Xavier Calbet

We define the complexity of DNA sequences as the information content per nucleotide, calculated by means of some Lempel-Ziv data compression algorithm. It is possible to use the statistics of the complexity values of the functional regions…

Quantitative Methods · Quantitative Biology 2008-03-05 Giulia Menconi , Vieri Benci , Marcello Buiatti

The Chapter starts with introductory information about quantitative linguistics notions, like rank--frequency dependence, Zipf's law, frequency spectra, etc. Similarities in distributions of words in texts with level occupation in quantum…

Data Analysis, Statistics and Probability · Physics 2024-01-04 Andrij Rovenchak

The classical approach to measure the expressive power of deep neural networks with piecewise linear activations is based on counting their maximum number of linear regions. This complexity measure is quite relevant to understand general…

Machine Learning · Computer Science 2021-02-26 Yuuki Takai , Akiyoshi Sannai , Matthieu Cordonnier

We discuss algorithms for estimating the Shannon entropy h of finite symbol sequences with long range correlations. In particular, we consider algorithms which estimate h from the code lengths produced by some compression algorithm. Our…

Statistical Mechanics · Physics 2017-04-24 Thomas Schürmann , Peter Grassberger

A measure of complexity based on a probabilistic description of physical systems is proposed. This measure incorporates the main features of the intuitive notion of such a magnitude. It can be applied to many physical situations and to…

Chaotic Dynamics · Physics 2009-11-07 Ricardo Lopez-Ruiz , Hector Mancini , Xavier Calbet
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