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The structure and interactions in electrolytes at high concentration have implications from energy storage to biomolecular interactions. However many experimental observations are yet to be explained in these mixtures, which are far beyond…

Soft Condensed Matter · Physics 2017-04-05 Alexander Smith , Alpha Lee , Susan Perkin

While the thermodynamics of DNA hybridization is well understood, much less is known about the kinetics of this classic system. Filling this gap in our understanding has new urgency because DNA nanotechnology often depends critically on…

Soft Condensed Matter · Physics 2013-10-28 Thomas E. Ouldridge , Petr Šulc , Flavio Romano , Jonathan P. K. Doye , Ard A. Louis

Electric field dynamics at a positive ion imbedded in an electron gas is considered using a semiclassical description. The dependence of the field autocorrelation function on charge number is studied for strong ion-electron coupling via MD…

Statistical Mechanics · Physics 2009-11-07 James Dufty , Ilya Pogorelov , Bernard Talin , Annette Calisti

Ion transport through narrow water--filled channels is impeded by a high electrostatic barrier. The latter originates from the large ratio of the dielectric constants of the water and a surrounding media. We show that ``doping'', i.e.…

Soft Condensed Matter · Physics 2009-11-11 J. Zhang , A. Kamenev , B. I. Shklovskii

The possibility of finding multistability in the density and current of an interacting nanoscale junction coupled to semi-infinite leads is studied at various levels of approximation. The system is driven out of equilibrium by an external…

Mesoscale and Nanoscale Physics · Physics 2015-06-03 E. Khosravi , A. -M. Uimonen , A. Stan , G. Stefanucci , S. Kurth , R. van Leeuwen , E. K. U. Gross

The out-of-equilibrium transport properties of a double quantum dot system in the Kondo regime are studied theoretically by means of a two-impurity Anderson hamiltonian with interimpurity hopping. The hamiltonian is solved by means of a…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Ramon Aguado , David C. Langreth

The early dynamics in heavy-ion collisions involves a rapid, far from equilibrium evolution. This early pre-equilibrium stage of the dynamics can be modeled using kinetic equations. The effect of this pre-equilibrium stage on final…

Nuclear Theory · Physics 2023-04-05 Piotr Bozek

We review recent advances in the physics of strongly interacting charged systems functioning in water at room temperature. We concentrate on the phenomena which go beyond the framework of mean field theories, whether linear Debye-Huckel or…

Soft Condensed Matter · Physics 2007-05-23 A. Yu. Grosberg , T. T. Nguyen , B. I. Shklovskii

A continuum model of crystalline solid equilibrium is presented in which the underlying periodic lattice structure is taken explicitly into account. This model also allows for both point and line defects in the bulk of the lattice and at…

Materials Science · Physics 2009-10-31 Paolo Cermelli , Shaun Sellers

This work investigates the interactions of H-NS proteins and bacterial genomic DNA through computer simulations performed with a coarse-grained model. The model was developed specifically to study the switch of H-NS proteins from the…

Biological Physics · Physics 2018-05-30 Marc Joyeux

Monopolar charge disorder effects are studied in the context of fluctuation-induced interactions between neutral dielectric slabs. It is shown that quenched bulk charge disorder gives rise to an additive contribution to the net interaction…

Other Condensed Matter · Physics 2015-05-13 Ali Naji , David S. Dean , Jalal Sarabadani , Ron R. Horgan , Rudolf Podgornik

For ion channel gating, the appearance of two distinct conformational states and the discrete transitions between them is essential, and therefore of crucial importance to all living organisms. We show that the physical interplay between…

Soft Condensed Matter · Physics 2015-06-19 Douwe Jan Bonthuis , Ramin Golestanian

Magnetosonic waves propagating perpendicular to an external magnetic field are studied with attention to the effect of multiple ion species. First, power spectra of magnetic field fluctuations and autocorrelation functions in thermal…

Plasma Physics · Physics 2007-05-23 Mieko Toida , Takashi Yoshiya , Yukiharu Ohsawa

The recently developed modified Donnan (mD) model provides a simple and useful description of the electrical double layer in microporous carbon electrodes, suitable for incorporation in porous electrode theory. By postulating an attractive…

Chemical Physics · Physics 2014-01-22 P. M. Biesheuvel , S. Porada , M. Levi , M. Z. Bazant

The classical electrostatic interaction between DNA molecules in water in the presence of counterions is reconsidered and we propose it is governed by a modified Poisson-Boltzmann equation. Quantum fluctuations are then studied and shown to…

Quantitative Methods · Quantitative Biology 2008-06-20 Alfredo Iorio , Samik Sen , Siddhartha Sen

In this paper, we investigate the consequences of ion association, coupled with the considerations of finite size effects and orientational ordering of Bjerrum pairs as well as ions and water molecules, on electric double layer near charged…

Soft Condensed Matter · Physics 2022-02-07 Jun-Sik Sin

The effect of conformational fluctuations of modular macromolecules, such as enzymes, on their diffusion properties is addressed using a simple generic model of an asymmetric dumbbell made of two hydrodynamically coupled subunits. It is…

Soft Condensed Matter · Physics 2017-11-22 Pierre Illien , Tunrayo Adeleke-Larodo , Ramin Golestanian

Realistic modeling of ionic systems necessitates taking explicitly account of many-body effects. In molecular dynamics simulations, it is possible to introduce explicitly these effects through the use of additional degrees of freedom. Here…

The electric conductivity of ionic solutions is well understood at low ionic concentrations of up to a few millimolar but becomes difficult to unravel at higher concentrations that are still common in nature and technological applications.…

Soft Condensed Matter · Physics 2023-01-03 Yael Avni , David Andelman , Henri Orland

Soft matter materials, such as polymers, membranes, proteins, are often electrically charged. This makes them water soluble, which is of great importance in technological application and a prerequisite for biological function. We discuss a…

Soft Condensed Matter · Physics 2007-05-23 H. Boroudjerdi , Y. -W. Kim , A. Naji , R. R. Netz , X. Schlagberger , A. Serr
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