Related papers: Comment on "Can one predict DNA Transcription Star…
{\it Transcription} is the process whereby RNA molecules are polymerized by molecular machines, called RNA polymerase (RNAP), using the corresponding DNA as the template. Recent {\it in-vivo} experiments with single cells have established…
Cell nuclei detection is a challenging research topic because of limitations in cellular image quality and diversity of nuclear morphology, i.e. varying nuclei shapes, sizes, and overlaps between multiple cell nuclei. This has been a topic…
We study the thermodynamic and dynamic behaviors of twist-induced denaturation bubbles in a long, stretched random sequence of DNA. The small bubbles associated with weak twist are delocalized. Above a threshold torque, the bubbles of…
Following on from ideas presented in a recent paper by Schneider et al. (2010) on "The Far Future of Exoplanet Direct Characterization", I argue that they have exaggerated the technical obstacles to performing such 'direct characterization'…
Reply to Comment on "Torus Instability" by J. Chen, Phys. Rev. Lett. 99, 099501 (2007). Refers to "Torus Instability" by Kliem and Toeroek, Phys. Rev. Lett. 96, 255002 (2006).
Comment on: L.F. Cugliandolo and J.L. Iguain; Phys. Rev. Lett. {\bf 85} 3448 (2000)
We introduce and test a method to predict the sequence of DNA molecules from in silico unzipping experiments. The method is based on Bayesian inference and on the Viterbi decoding algorithm. The probability of misprediction decreases…
The authors of preprint arXiv:2009.00286 and paper Appl. Phys. Lett. 117, 130501 (2020), Y. Sivan and Y. Dubi, made several wrong and inconsistent comments on our papers [J. Phys. Chem. C 117, 16616-16631 (2013), ACS Photonics 4 (11),…
Based on a model first studied in [Physical Review A, vol. 43, 5240-5260,1991] properties of correlation function for expansion-modification systems are developed. The existence of several characteristic exponents is proved. The…
This is a comment on "How to Observe Coherent Electron Dynamics Directly" [H. J. Suominen and A. Kirrander, Phys. Rev. Lett. 112, 043002 (2014)].
This is a comment being submitted to Physical Review Letters on a recent letter by Hellberg and Manousakis on stripes in the t-J model.
Correction to The Annals of Probability 21 (1993) 554--580 [http://projecteuclid.org/euclid.aop/1176989415]
Transcription factors are proteins that regulate the expression of genes by binding to specific genomic regions known as Transcription Factor Binding Sites (TFBSs), typically located in the promoter regions of those genes. Accurate…
We expand upon a new theoretical framework for Diffusion Limited Aggregation and associated Dielectric Breakdown Models in two dimensions [R. C. Ball and E. Somfai, Phys. Rev. Lett. 89, 135503 (2002)]. Key steps are understanding how these…
We study the prediction of T-cell response for specific given peptides, which could, among other applications, be a crucial step towards the development of personalized cancer vaccines. It is a challenging task due to limited, heterogeneous…
A simple Langevin approach is used to study stationary properties of the Peyrard-Bishop-Dauxois model for DNA, allowing known properties to be recovered in an easy way. Results are shown for the denaturation transition in homogeneous…
Comment an the recent Letter [Phys. Rev. Lett. 86, 2050 (2001)] by F.Wang and D. P. Landau.
Comment on the Letter by W. Rantner and X-G. Wen, Phys. Rev. Lett. v.86, p.3871 (2001).
This is a reply to the comment by A. W. Sandvik (cond-mat/0010433) on our paper Phys. Rev. Lett. 84, 4204 (2000). We show that his data do not conflict with our data nor with our conclusions.
This paper replies the comments by J. D. Jackson [Am. J. Phys. 75, 844-845 (2007)] and V. Hnizdo [Am. J. Phys. 75, 845-846 (2007)].