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Related papers: On the biophysical interpretation of lethal DNA le…

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Published survival data for V79 cells irradiated by monoenergetic protons, helium-3, carbon, and oxygen ions and for CHO cells irradiated by carbon ions have been analyzed using the probabilistic two-stage model of cell inactivation. Three…

Medical Physics · Physics 2016-08-16 Pavel Kundrát

According to the experimental evidence damage induced by densely ionizing radiation in mammalian cells is distributed along the DNA molecule in the form of clusters. The most critical constituent of DNA damage are double-strand breaks…

Biological Physics · Physics 2007-05-23 E. Gudowska-Nowak , M. Kraemer , G. Kraft , G. Taucher-Scholz

In order to study the molecular damage induced in the form of single-strand and double-strand breaks by the ionizing radiation at the DNA level, Geant4-DNA Monte Carlo simulation code for complete transportation of primary protons and other…

Biological Physics · Physics 2018-10-10 Mojtaba Mokari , Mohammad Hassan Alamatsaz , Hossein Moeini , Reza Taleei

Numerical simulations are performed on a stochastic model based on Monte Carlo damage simulation process and Markov Chain Monte Carlo techniques to investigate the formation and evaluation of isolated and multiple DNA damage and cellular…

Quantitative Methods · Quantitative Biology 2019-11-20 M. Loan , B. Freeman , A. Bhat , M. Tantary , M. Brown , K. Virk

The target theory is the most classical hypothesis explaining radiation-induced cell death, the physical or biological nature of the "target" remains ambiguous. This study hypothesizes that the distribution of DNA double-strand breaks…

Medical Physics · Physics 2025-06-11 Ankang Hu , Wanyi Zhou , Xiyu Luo , Rui Qiu , Junli Li

The elucidation of fundamental mechanisms underlying ion-induced radiation damage of biological systems is crucial for the advancement of radiotherapy with ion beams and for radiation protection in space. The study of ion-induced biodamage…

Biological Physics · Physics 2023-09-06 Ida Friis , Alexey V. Verkhovtsev , Ilia A. Solov'yov , Andrey V. Solov'yov

DNA double-strand breaks (DSBs) represent a serious source of damage for all living things and thus there have been many quantitative studies of DSBs both in vivo and in vitro. Despite this fact, the processes that lead to their production…

Biomolecules · Quantitative Biology 2015-06-05 Shunsuke F. Shimobayashi , Takafumi Iwaki , Toshiaki Mori , Kenichi Yoshikawa

This paper is devoted to the analysis of the complex damage of DNA irradiated by ions. The analysis and assessment of complex damage is important because cells in which it occurs are less likely to survive because the DNA repair mechanisms…

Biological Physics · Physics 2012-01-30 Eugene Surdutovich , David C. Gallagher , Andrey V. Solov'yov

Due to the physical and chemical processes that are involved, interactions of ionizing radiations with cells lead to single- and double-strand breaks (SSB and DSB) and base damage to DNA cells. The damage may kill the cells or may be…

The variation of the oxygen enhancement ratio (OER) across Linear Energy Transfer (LET) currently lacks a comprehensive mechanistic interpretation and a mechanistic model. Our earlier research revealed a significant correlation between the…

Biological Physics · Physics 2025-10-15 Ankang Hu , Wanyi Zhou , Xiyu Luo , Rui Qiu , Junli Li

Electromagnetic radiation (photons) or particle beam (protons or heavy ions) have similar biological effects, i.e. damage to human cell DNA that eventually leads to cell death if not correctly repaired. The biological effects at the level…

Medical Physics · Physics 2018-04-24 Pierre Scalliet , John Gueulette

A mechanism of double strand breaking (DSB) in DNA due to the action of two electrons is considered. These are the electrons produced in the vicinity of DNA molecules due to ionization of water molecules with a consecutive emission of two…

Biological Physics · Physics 2015-06-03 Eugene Surdutovich , Andrey V. Solov'yov

Postulating that increasing linear energy transfer (LET) causes non-random clustering of lethal lesions to deviate from the Poisson distribution, we employ a non-Poisson approach as a more flexible alternative that accounts for…

Medical Physics · Physics 2020-09-22 M. Loan , M. Alameen , A. Bhat , M. Tantary

We present a multi-scale simulation of early stage of DNA damages by the indirect action of hydroxyl ($^\bullet$OH) free radicals generated by electrons and protons. The computational method comprises of interfacing the Geant4-DNA Monte…

Biological Physics · Physics 2015-06-17 Ramin M. Abolfath , David J. Carlson , Zhe J. Chen , Ravinder Nath

Model of biological effects of ionizing particles, especially of protons and other ions, is proposed. The model is based on distinguishing the single-particle and collective effects of the underlying radiobiological mechanism. The…

Biological Physics · Physics 2016-08-16 Pavel Kundrát , Miloš Lokajíček , Hana Hromčíková

In previous work, we constructed a statistical framework for estimating the rate of clustered ionization from charged particle radiation in DNA. This model is extended to include contributions from secondary electrons. Using a simple…

Medical Physics · Physics 2023-11-17 Kay Kinoshita , Yusra Zabarmawi

We propose an inclusive approach for calculating characteristics of secondary electrons produced by ions/protons in tissue-like media. This approach is based on an analysis of the projectile's interaction with the medium on the microscopic…

Biological Physics · Physics 2009-11-13 E. Surdutovich , O. I. Obolensky , E. Scifoni , I. Pshenichnov , I. Mishustin , A. V. Solov'yov , W. Greiner

Biological effects of proton and light ion irradiations have been studied in detail by analyzing published cell survival data with the help of the probabilistic two-stage radiobiological model. Probabilities of single ion tracks to induce…

Biological Physics · Physics 2016-08-16 Pavel Kundrát , Miloš Lokajíček , Hana Hromčíková , Libor Judas

In mammalian cells, repair centers for DNA double-strand breaks (DSBs) have been identified. However, previous researches predominantly rely on methods that induce specific DSBs by cutting particular DNA sequences. The clustering and its…

Biological Physics · Physics 2024-10-07 Junyi Chen , Wenzong Ma , Yuqi Ma , Gen Yang

In our last paper, we have reported the direct interact between energetic ions and DNA, and its components, pointing out that damage to DNA is actually of highest biological consequence, as the integrity of DNA sequence is essential for…

Biological Physics · Physics 2008-07-02 Wei Wang , Zengliang Yu , Wenhui Su
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