Related papers: Can one predict DNA Transcription Start Sites by s…
We study the features on the unzipping process of a modified version of the Peyrard-Bishop- Dauxois model. We show that the inclusion of a barrier in the on-site potential allows for the existence of stable domain wall solutions between…
The theory of false vacuum decay in a thermal system may have a cross-over from predominantly thermal transitions to quantum transitions as the temperature is decreased. New numerical methods and results are presented here that can be used…
Stochastic motion of particles in a highly unstable potential generates a number of diverging trajectories leading to undefined statistical moments of the particle position. This makes experiments challenging and breaks down a standard…
This paper present a simulation strategy for DNS of turbulent co-current Taylor bubble flow. This is a continuation of the work presented in [2] in which Large Eddy Simulation (LES) of co-current turbulent Taylor bubble flow was presented.…
We present data driven kinematic models for the motion of bubbles in high-Re turbulent fluid flows based on recurrent neural networks with long-short term memory enhancements. The models extend empirical relations, such as Maxey-Riley (MR)…
Membrane budding has been extensively studied as an equilibrium process attributed to the formation of coexisting domains or changes in the vesicle area to volume ratio (reduced volume). In contrast, non-equilibrium budding remains…
Single-particle traces of the diffusive motion of molecules, cells, or animals are by-now routinely measured, similar to stochastic records of stock prices or weather data. Deciphering the stochastic mechanism behind the recorded dynamics…
We investigate the transient bubbles that spontaneously appear in a simple liquid using molecular simulations. The objective is to deduce the free-energy of formation of the bubbles $W(s)$ from the bubble size distribution $p(s)$ through…
Periodic fluidization of solids in a gas medium can generate structured bubbling patterns. This phenomenon has been successfully reproduced in fluidized bed systems called pulsed-fluidized beds, known for their efficient mixing and…
Tracking an unknown number of low-observable objects is notoriously challenging. This letter proposes a sequential Bayesian estimation method based on the track-before-detect (TBD) approach. In TBD, raw sensor measurements are directly used…
The thermodynamical properties of heterogeneous DNA sequences are computed by path integral techniques applied to a nonlinear model Hamiltonian. The base pairs relative displacements are interpreted as time dependent paths whose amplitudes…
Pair production in a constant electric field is closely analogous to bubble nucleation in a false vacuum. The classical trajectories of the pairs are Lorentz invariant, but this invariance should be broken by the nucleation process. Garriga…
Focusing on supercooled phase transitions in models with classical scale symmetry, we formulate a state-of-the art framework for computing the bubble-nucleation rate, accounting for the presence of various energy scales. In particular, we…
We report on a investigation of turbulent bubbly flows. Bubbles of a size larger than the dissipative scale, cannot be treated as point-wise inclusions, and generate important hydrodynamic fields in the carrier fluid when in motion.…
Dissipative particle dynamics (DPD) is a novel particle method for mesoscale modeling of complex fluids. DPD particles are often thought to represent packets of real atoms, and the physical scale probed in DPD models are determined by the…
In this article we consider the estimation of static parameters for partially observed diffusion process with discrete-time observations over a fixed time interval. In particular, we assume that one must time-discretize the partially…
We study energy localization on the oscillator-chain proposed by Peyrard and Bishop to model the DNA. We search numerically for conditions with initial energy in a small subgroup of consecutive oscillators of a finite chain and such that…
We investigate Turing instability and pattern formation in two-dimensional domains for two reaction-diffusion models, obtained as diffusive limits of kinetic equations for mixtures of monatomic and polyatomic gases. The first model is of…
We developed a low-energy model that can be used at any time to describe the dynamics of DNA bubbles at temperatures below the melting point. The Schr\"odinger equation associated with this problem is solved in imaginary time with a quantum…
We present an anomalous experimental observation on the rising speed of air bubbles in a Hele-Shaw cell containing a suspension of spherical, neutrally-buoyant, non-Brownian particles. Strikingly, bubbles rise faster in suspensions as…