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Based upon the correlation matrix of the human promoter sequences, a complex network is constructed to capture the principal relationships between these promoters. It is a complex network has the properties of the right-skewed degree…

Genomics · Quantitative Biology 2007-05-23 Huijie Yang , Fangcui Zhao , Binghong Wang

Networks have in recent years emerged as an invaluable tool for describing and quantifying complex systems in many branches of science. Recent studies suggest that networks often exhibit hierarchical organization, where vertices divide into…

Machine Learning · Statistics 2008-11-05 Aaron Clauset , Cristopher Moore , M. E. J. Newman

Heterogeneous networks play a key role in the evolution of communities and the decisions individuals make. These networks link different types of entities, for example, people and the events they attend. Network analysis algorithms usually…

Computers and Society · Computer Science 2016-11-17 Rumi Ghosh , Kristina Lerman

A number of recent studies have focused on the statistical properties of networked systems such as social networks and the World-Wide Web. Researchers have concentrated particularly on a few properties which seem to be common to many…

Statistical Mechanics · Physics 2009-11-07 Michelle Girvan , M. E. J. Newman

Nature, technology and society are full of complexity arising from the intricate web of the interactions among the units of the related systems (e.g., proteins, computers, people). Consequently, one of the most successful recent approaches…

Physics and Society · Physics 2014-05-23 Enys Mones , Lilla Vicsek , Tamás Vicsek

Measures of complex network analysis, such as vertex centrality, have the potential to unveil existing network patterns and behaviors. They contribute to the understanding of networks and their components by analyzing their structural…

Social and Information Networks · Computer Science 2018-11-06 Felipe Grando , Diego Noble , Luis C. Lamb

While the majority of approaches to the characterization of complex networks has relied on measurements considering only the immediate neighborhood of each network node, valuable information about the network topological properties can be…

Statistical Mechanics · Physics 2015-06-24 Luciano da Fontoura Costa , Filipi Nascimento Silva

One property of networks that has received comparatively little attention is hierarchy, i.e., the property of having vertices that cluster together in groups, which then join to form groups of groups, and so forth, up through all levels of…

Physics and Society · Physics 2008-04-12 Aaron Clauset , Cristopher Moore , M. E. J. Newman

The concept of 'complexity' plays a central role in complex network science. Traditionally, this term has been taken to express heterogeneity of the node degrees of a therefore complex network. However, given that the degree distribution is…

Physics and Society · Physics 2021-07-01 Éverton F. da Cunha , Luciano da F. Costa

Modular and hierarchical community structures are pervasive in real-world complex systems. A great deal of effort has gone into trying to detect and study these structures. Important theoretical advances in the detection of modular have…

Social and Information Networks · Computer Science 2023-06-01 Michael T. Schaub , Jiaze Li , Leto Peel

Clustering and community structure is crucial for many network systems and the related dynamic processes. It has been shown that communities are usually overlapping and hierarchical. However, previous methods investigate these two…

Computers and Society · Computer Science 2009-02-20 Huawei Shen , Xueqi Cheng , Kai Cai , Mao-Bin Hu

We consider the problem of detecting communities or modules in networks, groups of vertices with a higher-than-average density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of…

Data Analysis, Statistics and Probability · Physics 2007-05-23 M. E. J. Newman

Identifying meaningful structure across multiple scales remains a central challenge in network science. We introduce Hierarchical Clustering Entropy (HCE), a general and model-agnostic framework for detecting informative levels in…

Social and Information Networks · Computer Science 2025-08-07 Jorge Martinez Armas

Hierarchy and centrality are two popular notions used to characterize the importance of entities in complex systems. Indeed, many complex systems exhibit a natural hierarchical structure, and centrality is a fundamental characteristic…

Social and Information Networks · Computer Science 2021-03-03 Stephany Rajeh , Marinette Savonnet , Eric Leclercq , Hocine Cherifi

Many large, real-world complex networks have rich community structure that a network scientist seeks to understand. These communities may overlap or have intricate internal structure. Extracting communities with particular topological…

Social and Information Networks · Computer Science 2016-09-20 Christine Klymko , Geoffrey Sanders

Networks have become a key approach to understanding systems of interacting objects, unifying the study of diverse phenomena including biological organisms and human society. One crucial step when studying the structure and dynamics of…

Physics and Society · Physics 2010-09-16 Yong-Yeol Ahn , James P. Bagrow , Sune Lehmann

The rise in complexity of network data in neuroscience, social networks, and protein-protein interaction networks has been accompanied by several efforts to model and understand these data at different scales. A key multiscale network…

Methodology · Statistics 2025-03-04 Al-Fahad Al-Qadhi , Keith Levin , Vincent Lyzinski

Community structure in networks is often a consequence of homophily, or assortative mixing, based on some attribute of the vertices. For example, researchers may be grouped into communities corresponding to their research topic. This is…

Physics and Society · Physics 2012-02-15 Steve Gregory

The quest for a quantitative characterization of community and modular structure of complex networks produced a variety of methods and algorithms to classify different networks. However, it is not clear if such methods provide consistent,…

Physics and Society · Physics 2016-01-08 Juan Ignacio Perotti , Claudio Juan Tessone , Guido Caldarelli

Common experience suggests that many networks might possess community structure - division of vertices into groups, with a higher density of edges within groups than between them. Here we describe a new computer algorithm that detects…

Statistical Mechanics · Physics 2015-06-24 M. E. J. Newman , M. Girvan
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